G2051996


Basic Information

Item Value
gene id G2051996
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12398512 ~ 12402555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2347001
CCGTCCTTGAGCCAGTCCTGGAAGCCCAGTTTGCCAGCCTCAGGCTTCCCAACTCCAGATCCACACTGGGCCACAATCCACTGCACCAAAAGCTCCTCCACCTCAGCGTCGTACTTCTTGTCAATCTTGTCCTGCACCACACGGCTCATGCCATAAGATGGACCTTTGTTGGCCATGCCTACCTGAGGTCCCTTTCCCACTGTGTTAAAGTATGAAGCGAAGAGTCTTTCTTCTGTACAAGCGCTGGgtcaggaggtgtgtgtgtgactgagtgtttGTATACTTCTAGCTCCAGCAAAGTCCTCCCTCGGAAAAG

Function

NR:

description
transgelin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2347001 True 316 lncRNA 0.53 2 12398512 12402555

Neighbor

gene id symbol gene type direction distance location
pcsk7 LOC106580820 coding upstream 1745 12374563 ~ 12396767 (+)
LOC110507072 LOC106580819 coding upstream 29928 12353557 ~ 12368584 (+)
LOC110507554 LOC106580899 coding upstream 45103 12348385 ~ 12353409 (+)
apoa-i-1 apoa-i-1 coding upstream 52180 12343805 ~ 12346332 (+)
LOC110507553 LOC106580818 coding upstream 94731 12282318 ~ 12303781 (+)
nudt8 LOC106580825 coding downstream 33505 12436060 ~ 12439501 (+)
si:ch1073-280e3.1 bfc2-b coding downstream 46391 12448946 ~ 12461330 (+)
LOC110507560 LOC106580827 coding downstream 64002 12466557 ~ 12475236 (+)
LOC110507563 LOC106580829 coding downstream 179701 12582256 ~ 12593139 (+)
LOC110507566 LOC106580832 coding downstream 292346 12694901 ~ 12706764 (+)
G2051958 NA non-coding upstream 56446 12307511 ~ 12342066 (+)
G2052014 NA non-coding upstream 84535 12313328 ~ 12313977 (+)
G2051940 NA non-coding upstream 163564 12221691 ~ 12234948 (+)
G2051936 NA non-coding upstream 182287 12214128 ~ 12216225 (+)
G2052075 NA non-coding downstream 61060 12463615 ~ 12463855 (+)
G2052088 NA non-coding downstream 81248 12483803 ~ 12487123 (+)
G2052080 NA non-coding downstream 86915 12489470 ~ 12515979 (+)
G2052101 NA non-coding downstream 111079 12513634 ~ 12519150 (+)
G2052104 NA non-coding downstream 126834 12529389 ~ 12529624 (+)
G2051018 LOC106580809 other upstream 260713 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1404924 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1620145 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 1815427 10494894 ~ 10583085 (+)
LOC110507524 LOC106612657 other upstream 1981217 10391240 ~ 10417311 (+)
G2053443 NA other downstream 575972 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 1152185 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2422965 14825520 ~ 14841123 (+)
G2056256 NA other downstream 3194478 15597033 ~ 15597651 (+)

Expression


Co-expression Network