G2053230 (LOC106580833)


Basic Information

Item Value
gene id G2053230
gene name LOC106580833
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12716904 ~ 12717733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348335
CGCAAACCAAAAATGAATGTATAGGtcattggacaagtccaggtaggtggtccttccctgtttcagctcattttcttctgtttggtgcctaatgaacatgggGCCCTGGAATCACTGGATAGTGAAAGACTAAAGTTACACAAAAGTGGGATCCTTTGGTGAATTTCAGAAAGTTTGggatagaaaataaataaaaaatgaaaacacCTCATCAAATTTCAATAAACAAATGTAAACCCTGCCAAACATTCACAACATAGGAATTTAACGGCTGCATAGGCCTATAAATTGGCAAAGGCTGAGGATGTGTGTTCAATAGGCAAACAATTttcaaaccatttaaatgcattcAAATCATTTTTGAGAAGGACTTGAGCATTTTTGTGGCATACGGTGGTTACATTCAGACgcga
>TU2348336
CGCAAACCAAAAATGAATGTATAGGtcattggacaagtccaggtaggtggtccttccctgtttcagctcattttcttctgtttggtgcctaatgaacatgggGCCCTGGAATCACTGGATAGTGAAAGACTAAAGTTACACAAAAGTGGGATCCTTTGGTGAATTTCAGAAAGTTTGggatagaaaataaataaaaaatgaaaacacCTCATCAAATTTCAATAAACAAATGTAAACCCTGCCAAACATTCACAACATAGGAATTTAACGGCTGCATAGGCCTATAAATTGGCAAAGGCTGAGGATGTGTGTTCAATAGGCAAACAATTttcaaaccatttaaatgcattcAAATCATTTTTGAGAAGGACTTGAGCATTTTTGTGGCATACGGTGGTTACATTCAGACgcgagtcccccccccccccccccactgtctcAAGTGTTAAAAATTAATAACATTTCATTTCATTATTGAAACCCCATGAATGCTGGTCTTAGCCACAGCTCATTAGTCCTGCTGTGGCTAGTCATCATCAGGATTGCGGTCCTCCCGAGCCAGTCTCAGTCGGGACAGGATGTGTTTCTTGGGGAACTTGAGGGTGGTACAGCCGAACTGGCTGACTCCCCCCGTGTCTCTGGGTAGTTTCTCCCGTCTCTGGACCCAGCTGCGCCAGCCAGGCTTCCAACAGTACACACTGTCATAGAAACGGGAGCCGTTCTCCCCGCCCAGCACGTATATCCTGCGTTTCCACCTGGCCACGCCCCCGGCAGCGATCCGCCTCGGCAGCCCTGGAAAAACCACTGGACTAGGGGCTCGGTCGCTCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348335 False 413 lncRNA 0.38 1 12716904 12717316
TU2348336 True 830 lncRNA 0.48 1 12716904 12717733

Neighbor

gene id symbol gene type direction distance location
LOC110507566 LOC106580832 coding upstream 10140 12694901 ~ 12706764 (+)
LOC110507563 LOC106580829 coding upstream 123765 12582256 ~ 12593139 (+)
LOC110507560 LOC106580827 coding upstream 241668 12466557 ~ 12475236 (+)
si:ch1073-280e3.1 bfc2-b coding upstream 255574 12448946 ~ 12461330 (+)
nudt8 LOC106580825 coding upstream 277403 12436060 ~ 12439501 (+)
LOC110507570 LOC106580836 coding downstream 3136 12720869 ~ 12742117 (+)
LOC110507572 LOC106580837 coding downstream 31784 12749517 ~ 12752428 (+)
LOC118944739 NA coding downstream 64523 12782256 ~ 12791115 (+)
trnaa-ugc-186 NA coding downstream 77862 12795595 ~ 12795670 (+)
nop53 LOC106612613 coding downstream 84708 12802441 ~ 12814037 (+)
G2053202 NA non-coding upstream 24786 12682186 ~ 12692118 (+)
G2053215 NA non-coding upstream 27440 12688824 ~ 12689464 (+)
G2053142 NA non-coding upstream 65884 12594124 ~ 12651020 (+)
G2053127 NA non-coding upstream 137658 12578916 ~ 12579246 (+)
G2052106 NA non-coding upstream 181233 12534334 ~ 12535671 (+)
G2053222 NA non-coding downstream 6638 12724371 ~ 12725059 (+)
G2053223 NA non-coding downstream 7880 12725613 ~ 12726493 (+)
G2053239 NA non-coding downstream 29413 12747146 ~ 12747819 (+)
G2053240 NA non-coding downstream 30301 12748034 ~ 12748302 (+)
G2053243 NA non-coding downstream 36751 12754484 ~ 12754786 (+)
G2051018 LOC106580809 other upstream 579105 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1723316 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1938537 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2133819 10494894 ~ 10583085 (+)
G2053443 NA other downstream 260794 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 837007 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2107787 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2879300 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3351837 15776205 ~ 16131560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G18090 LOC100692633,LOC103364876,LOC101484725,LOC102788264,LOC108247332 non-coding NC_053113.1 CM020910.1 19685379 ~ 19689154 (+)