G2053222


Basic Information

Item Value
gene id G2053222
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12724371 ~ 12725059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348321
TGCTGTGTGTTGCAAAACTGTAGATAACCGCTCAACAGCTgctttgtctttgtgtgtgtgtgtgacaagaactGAGCAACGTGGTGTGACTGCTGTATGTTGCAAAACTATAGATATGTGGGTACAGGGAGGGGAGGCTCATCACGAGGTTTAACTGACGTGGAGAAATACTGAGTAACACAATGACAAGATAACAGGAACGGAGTAGTTGCAGCAACTAGAATGTGATACCAGAACAGTAAGAATCTATACATCGATGGAGGGAGGACTCCAGGAGGTGGGGACCAGCCTGAGCGCCTACGATAGGCTGAGCAAGTCTAAACCACGCTcagcctctactgtgataggccaacagagGAGTTGGAACTACgtctatcacagtataagaaCAGCTGTATACTTACTTCTAGTTAGTTCTCTGTTAACCCTGCGTGGTGACACATTGAACctgtatatacgaaaattg
>TU2348323
ttgtgtgtgtgtgtgacaagaactGAGCAACGTGGTGTGACTGCTGTATGTTGCAAAACTATAGATATGTGGGTACAGGGAGGGGAGGCTCATCACGAGGTTTAACTGACGTGGAGAAATACTGAGTAACACAATGACAAGATAACAGGAACGGAGTAGTTGCAGCAACTAGAATGTGATACCAGAACAGTAAGAATCTATACATCGATGGAGGGAGGACTCCAGGAGGTGGGGACCAGCCTGAGCGCCTACGATAGGCTGAGCAAGTCTAAACCACGCTcagcctctactgtgataggccaacagagGAGTTGGAACTACgtctatcacagtataagaaCAGCTGTATACTTACTTCTAGTTAGTTCTCTGTTAACCCTGCGTGGTGACACATTGAACctgtatatacgaaaattgcatttaccatttATTGCTTACTTACAGTTTTTTTCCAactgtttacacacgttttcaaaactgtctcctttttttcAAATCTCTACACACAATTtccaaaactgcacacacaaaatgcaaaatgcctca
>TU2348322
tgtgataggccaacagagGAGTTGGAACTACgtctatcacagtataagaaCAGCTGTATACTTACTTCTAGTTAGTTCTCTGTTAACCCTGCGTGGTGACACATTGAACctgtatatacgaaaattgcatttaccatttATTGCTTACTTACAGTTTTTTTCCAactgtttacacacgttttcaaaactgtctcctttttttcAAATCTCTACACACAATTtccaaaactgcacacacaaaatgcaaaatgcctcacatctccttcaaaatgtaacactgcattcaaaatgacaaacacatgtcagaatgaagcatttgcatcaaatggcaaacactgctttcataatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348321 False 466 lncRNA 0.46 1 12724371 12724836
TU2348323 False 546 lncRNA 0.43 1 12724420 12724965
TU2348322 True 350 lncRNA 0.36 1 12724710 12725059

Neighbor

gene id symbol gene type direction distance location
LOC110507566 LOC106580832 coding upstream 17607 12694901 ~ 12706764 (+)
LOC110507563 LOC106580829 coding upstream 131232 12582256 ~ 12593139 (+)
LOC110507560 LOC106580827 coding upstream 249135 12466557 ~ 12475236 (+)
si:ch1073-280e3.1 bfc2-b coding upstream 263041 12448946 ~ 12461330 (+)
nudt8 LOC106580825 coding upstream 284870 12436060 ~ 12439501 (+)
LOC110507572 LOC106580837 coding downstream 24458 12749517 ~ 12752428 (+)
LOC118944739 NA coding downstream 57197 12782256 ~ 12791115 (+)
trnaa-ugc-186 NA coding downstream 70536 12795595 ~ 12795670 (+)
nop53 LOC106612613 coding downstream 77382 12802441 ~ 12814037 (+)
LOC110507577 LOC106580842 coding downstream 92127 12817186 ~ 12855301 (+)
G2053230 LOC106580833 non-coding upstream 6638 12716904 ~ 12717733 (+)
G2053202 NA non-coding upstream 32253 12682186 ~ 12692118 (+)
G2053215 NA non-coding upstream 34907 12688824 ~ 12689464 (+)
G2053142 NA non-coding upstream 73351 12594124 ~ 12651020 (+)
G2053127 NA non-coding upstream 145125 12578916 ~ 12579246 (+)
G2053223 NA non-coding downstream 554 12725613 ~ 12726493 (+)
G2053239 NA non-coding downstream 22087 12747146 ~ 12747819 (+)
G2053240 NA non-coding downstream 22975 12748034 ~ 12748302 (+)
G2053243 NA non-coding downstream 29425 12754484 ~ 12754786 (+)
G2053249 NA non-coding downstream 46374 12771433 ~ 12771637 (+)
G2051018 LOC106580809 other upstream 586572 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1730783 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1946004 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2141286 10494894 ~ 10583085 (+)
G2053443 NA other downstream 253468 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 829681 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2100461 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2871974 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3344511 15776205 ~ 16131560 (+)

Expression


Co-expression Network