G2053223


Basic Information

Item Value
gene id G2053223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12725613 ~ 12726493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348325
agaattcctctatgggatttagaaaaggtgaatatgggggtaggtacaaaactaTACAAAATTGTGgatggatggcaaaccagttttggaccagaacagcccgTGAAAACTAATATTGGcccataaaaccacaaatctagcaggctcctgatctggatcagggacaagcattgtgtaaattgcatccaAAAAAGTGAGCAtattgtacggacccagtgtggcattgtgatggaggaccccgttttgagtgatggcagcacatagttatattacccccacgctgtccagggacattggtaattgccctctgtcctattacatttcttccgcggcgcctagttttggtgaggttgaagccaacctcatccacataaataaattcatggcgaattacatgggcatccagctccaatactctctgtaaaagacaaaaggatatacagatgaggaaatatggtatgtctgaagtactggaagtagtgttgcatacatacctctacaaagtcatgtcgcatattcttgactctgtcagagtttctctcaaatggcaccttgtaaagttgtttcatcgtcactcggtgccGTTGGAAGATGCGTTGTATggtaagcaccaactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttagcccaaacaactacctctttccctactgtatttaatttatttatttattttgctcctttgcacccccattatttttatttctactttgcacattctcccattgcaaatctaccattccagtgttttacttgctatattgtattaactttgccaccatggcctttttgcctttacctcccttatctcacctcatttgctcacatcgtatataga

Function

NR:

description
PREDICTED: uncharacterized protein LOC107717027

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348325 True 881 lncRNA 0.42 1 12725613 12726493

Neighbor

gene id symbol gene type direction distance location
LOC110507566 LOC106580832 coding upstream 18849 12694901 ~ 12706764 (+)
LOC110507563 LOC106580829 coding upstream 132474 12582256 ~ 12593139 (+)
LOC110507560 LOC106580827 coding upstream 250377 12466557 ~ 12475236 (+)
si:ch1073-280e3.1 bfc2-b coding upstream 264283 12448946 ~ 12461330 (+)
nudt8 LOC106580825 coding upstream 286112 12436060 ~ 12439501 (+)
LOC110507572 LOC106580837 coding downstream 23024 12749517 ~ 12752428 (+)
LOC118944739 NA coding downstream 55763 12782256 ~ 12791115 (+)
trnaa-ugc-186 NA coding downstream 69102 12795595 ~ 12795670 (+)
nop53 LOC106612613 coding downstream 75948 12802441 ~ 12814037 (+)
LOC110507577 LOC106580842 coding downstream 90693 12817186 ~ 12855301 (+)
G2053222 NA non-coding upstream 554 12724371 ~ 12725059 (+)
G2053230 LOC106580833 non-coding upstream 7880 12716904 ~ 12717733 (+)
G2053202 NA non-coding upstream 33495 12682186 ~ 12692118 (+)
G2053215 NA non-coding upstream 36149 12688824 ~ 12689464 (+)
G2053142 NA non-coding upstream 74593 12594124 ~ 12651020 (+)
G2053239 NA non-coding downstream 20653 12747146 ~ 12747819 (+)
G2053240 NA non-coding downstream 21541 12748034 ~ 12748302 (+)
G2053243 NA non-coding downstream 27991 12754484 ~ 12754786 (+)
G2053249 NA non-coding downstream 44940 12771433 ~ 12771637 (+)
G2053205 NA non-coding downstream 55887 12782380 ~ 12795742 (+)
G2051018 LOC106580809 other upstream 587814 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1732025 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 1947246 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2142528 10494894 ~ 10583085 (+)
G2053443 NA other downstream 252034 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 828247 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2099027 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2870540 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3343077 15776205 ~ 16131560 (+)

Expression


Co-expression Network