G2053205


Basic Information

Item Value
gene id G2053205
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12782380 ~ 12795742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348303
gaagggagaggatggagggagcgaGTCGGCTGGTCCAAAGGGAGGACATGAAGGACCTGTTTGGAACAGATTATGACTGATAAGATACAGGGACCCATACGCCGACACAATGGGGAAGTGTTGTATCCAGGAACCTAGGTCTCTACGGCACTGGGAGATATGATTGACAGATGGACCTGGAAGGACCACCATCATACatagatgaagggatggatggatgaacagGTCCGGTCACTGTGTCTACCAACTCTGCACCCCTGAATAGTCCAGAGAGCCACAAGCCCTCGCAGTGAACCAAGGTGCTCCAGTGAATACGGAGAGAGGGCCTGGATGGGAGGGCTGCAGGGGTTTCTCATGGTCTCACTTAGAAGGAAATGTTACTTAGAATGAATTGTCAAAGCTTCTTTCAGTAGTGTTGATCCTAATTGAActgtctgcaaacaagcaaacagaTTCCGATTTAAGTGGATAACACCATTTGGATTTATCGACATGAAGCTGAAACCCAGCGATACTCAGGTTACGTTTCATAtattgtactgaacaaaaatataaacgcaacatgcaacaatttcaacaattttttactgagttacagttcatataatgaaatcagtcaatttaaataaatacagtCGGGaatacagatacctttaaaaaaaaaaaaaaagtatgggcgtggatcagaaaaccagtcagtatctggtgtgaccaccatttggctcatgcagtgcgacacatctccttcgtatAGGcagtggaacacgctgtcgtacacgtcaatccagagcatcccaaacattctcagtgggtgacatgtctggtgagtatacaagccatggaaaaactgggatATTATCAGCAGACAGGAATTGTCTCCAGATCCTTGTGAcgtggggccgtgcattatcatgctgaaacatgaggggatggcggcggatgaatggcacgacaatgggcctcaggatctcgtcacgctatctctgtgcattcaggttgccatcaataaaatgcaattgtgttcgttgtccatagcttatgcctgcccataccataaccccatcgccaccatggggcactctgttcacaatgttgacatcagcaaaccgctcgcccacacacaacgccatacaagctgtctgccatctgtcCGGTACaattgaaaccgggattaattagtgaagagcacacttctccagagtGTCAGttgccatcgaaggtgagcatttcccCACTGAAGTCTATTACAACGCCGCACTGCAGTCACgttaagaccctggtgaggatgatgagcacgcagataagcttccctgagatggtttctgacggtttgtgcagaaatgatttggttgtgcaaacccacagtttcatcagctgtccgggtggctggtctcagataatCCTGCAGgtgaaaggggatacctagtcagttgtacaactgaatgcattcaactgaaatgtgtcttccgtatttaacccaacccctctgaatcagagaggtgcgggggctgccttaattgacatccaagTCTTCAGcgccctgggaacagtgggttaagtgccatgctcaggggcagaacaacatatttttaccttgtcagctctgggaatTGATCCATCAACctttaactgctaggctacctgccgaagaagccagatgtggaggtcctgggctggagtggttacatgtggtctgtggttgtgaggctggttggacatactgacaaattctctaaaacgatgttggagacggcttatggtagagaaattaacataaaattatctggcaacagctatgttggacattcctgcagtcagcatgcacgtgttgtgtgataaaactgcacattttagagtgaccttttattgtcccccagcacaagctgcacctgtgtaacaacaatgctgtttaatcagccacacctgaattatcttggcaaaggaaaaatgctcactaacagggatgtaaacaaatttgtacaacacatttttgagaaataagtgttttgtgcatttggaacatttctgggatcttttatttcagctcatgaaacatgggaccaagactttaaatgatttatatttttgttcagtgtatatagtgaaaacaaataACAGCACATCTATACAACTTTCCCTGGTGTACTGTGTAgttcagtggtactatagctaaAGTCACATTATAGAGTTAAGGAAACACCAGTATTTTGTTCTGCTAATATACACCCTTACGGAAAAAGGTGCATCTAGAACCTAAAACAGTTATtttgctgtccccataggagaaccctttgaagatccctttttggttccaggtagaaccatttccCCAGAGAGTTGTACAAGgtacccaaaagagttctacctagaaacagaaagggttctacctggaacaaaaatgGTTTTCCTATGGAcgcagccaaagaaccctttcggaacccttttttctacgAGTGTATGGAGAACAAAAAGGATATGTGGACAGAGATAAATGAATAGGAATTGATCAAATGTTACTGCTTTAGAATGAGGTTTTATTTAGAATTATAGCAAGGGTCCAGTGTTGTAATTCAATGAAAGGAAATGACAAAAAATACAATCTGACTTTGGTTCAATGTCTGCAGGCTACATTGTGCTTTTGCCATTTACAGTTGACGACCTACATTTATACAGTATTTCTCCCTTTAATAATCGTACCTAGCCTGATTTTATATTggtctctcctgtctgtgtgcCTAATGTTGTGTGTTTATGCTGGTGTTAATCTGTATCGTAGCTATgcgtactgtatatatttgagtGTGCCTCTGCGTATATACAGTTTGTCAGGTGTGTGGCAGTAATTGACAAGGACACTGATCCGGTGGCTAGATTAGAAGGTCAGTGTGGGTGGAAACTGGGAATGAGGGACAGCTATTCCTGAACCGGAGAATATATAGACCAAGACTTTTCTGTCCTGCTGCCCGACATACTCACCCACAAATTGATGTACACAATAGATATTCACCCTCATTTACTTCAGTACAACAACCCTGTTAGGCATTTCTAATCAGATGCTACTGTTTTATGGTGCAGGCAAAATTAGCAGATTTCTTTGCAGACTTGTTAAAATAAACAGGTCGGCAAACTACACCTACAATATTAAAAGTAGCACCTGAGTAGAAATATGTATGTGCAAAGGAATTAAGGGGACGCTAATTTAATTAGGCTACATCCCCTCAATTCATAAGCACATATTTTGATTACCATAATAATACAGATTTCTACTAGTTTCCTGAACATGTTAAGCAACATGGTGGAAAACTTCAGTCATACTTGTTCAGTGGGGAATTCTAAAAGTCAAGAAGACAGATTCGATCTTTATGTTGATTTGTCCTGTCCACCCCTGTGAGAGATGTGCTATTCTGAGGCACTTGCATGCTTGCAGCCTCAATCATGTATTTCCACTTTAACATCAGTACACTTCTAGCAGTTCATTAGGGCAGACTTTCACATATTTTACAATAAAACGGGATAGAGCAAAACAAATATAAATTAGTTTGAATGTTGAAGAGATAGCAAGGGTCTCTGAGGCTGAGCCCAGTTTTTATGCTAGTGTTAATTTATTTATCAATGTGATGACGGAACAAATGAACTGAGCACTTTTTGGACATTCTCTATAAGGATGTTCTCTCTCTGATCTGAAGACTTCACATAAAAACAGGGACACATAGAATGACACTGTGCTCTAGGCCTAACATACCACAGCTGAGAACAGATATCTGATACAGTGACGCTGATTGTTCCTGTAAGGATTCAGTTGTATATGTCAGATAAAACAGTACAGCTCCAACGGTCTGAATATTGTTGAAGAGATACCTAAAAGAATGTTTAGTATAGGGCTCTACAGATACCCTCCATCCATGGACTTCACGTCATTCAGAGTATGACTTGTCTAGTTGGCTCGTTGTTCAAATGTGGTACTTTACTGCCCTCTAGTGGTCGTTTTGTATCTCAAAAAATGTATAAAGAGCAGAATCcacgtaaaaaaaaacaacagtttttCCATTGCCTCAAAACATGGGACaagactaccaattggataccacgaaattcgGGAGATAATGAGGTAAAAAACTTGATTCACTACTGGACACTTTCCGTGTAACTCCTTTTCACAaggattcatttaaaaaaaataatcacacACATGATAACCTATTTTGTCCAGTATTTGAAACAACATTGGACTGAGATTGCTAATACATTCAGAAGAACACCAGATTGTGATGGTCATAGCAAACAAACCTTACTCATAATGGTCAAAGTTGTGCTTTTCACAGCTCTGGCGATAACATCAAATATCTATGTTAGTAATTGATTGATACTCAATGGACTAAACAAAATTGACagaagacaggtgtgtgtgtgtaacatccaTTTACCACCTTATATGAGAAATCTGGAAATTACAAACATTGTTTTATTTCAGCATCTTAACATTTCAAATTCAAATTAAGAAATAAAAATGATTTAAGTTAAAAGGGTGACACATCAACCTGAGAAACGTTACACAAATGTAGAATCTGGAGCGAAGGGGGAGGTCTAAATATCTCTGACCATCCCATTTATAGCTCCCATAACATTAACATACATGATCACTTTACCAATTACACTATATTTGGTTTGCAAGAGAGCATTGACCACCAAGCTCCATTACCCTCACAACGAGGCCCCTCAGGAGCGATCACAAAGAATATCACTGGATTCACTATTTGTTTAAAAAAGCCTTAAAATGCTGTCTCCGATTATTTATCACTGAAACCAAATTTGAGAATTCAAAGACAAAGGGAAAACAGTGTCAATTAGGTAAAGGGGAAATTAAATGAGAATGAACCATCAAGGATCCCCTTTGACAGCCAAAATAGGCTTACGTCAATGTTGTTTTCTGTACAAAATTTAATTAGAATCCCCCATCTCTATTTCATTCACAAATATTATTTCCACTATGAAAAATGTGCGtaagcaaaaataaaataaaaaataaaattgacaaccggtcccatgtggctcagttgatagagcatggtgcttgcaacaccagggttgtgggttcaattcccacaggggaccagtcaGGAGAAAGTATGGAAATGTATGCACTATTgttagtcactctggataagtgcATCTGCTCAATGATGTA

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348303 True 5185 lncRNA 0.41 2 12782380 12795742

Neighbor

gene id symbol gene type direction distance location
LOC110507572 LOC106580837 coding upstream 29952 12749517 ~ 12752428 (+)
LOC110507570 LOC106580836 coding upstream 40263 12720869 ~ 12742117 (+)
LOC110507566 LOC106580832 coding upstream 75616 12694901 ~ 12706764 (+)
LOC110507563 LOC106580829 coding upstream 189241 12582256 ~ 12593139 (+)
LOC110507560 LOC106580827 coding upstream 307144 12466557 ~ 12475236 (+)
nop53 LOC106612613 coding downstream 6699 12802441 ~ 12814037 (+)
LOC110507577 LOC106580842 coding downstream 21444 12817186 ~ 12855301 (+)
sirt2 sirt2 coding downstream 80059 12875801 ~ 12880508 (+)
rinl rinl coding downstream 84893 12880635 ~ 12892609 (+)
LOC110507586 LOC106565025 coding downstream 191831 12987564 ~ 12988797 (+)
G2053249 NA non-coding upstream 10743 12771433 ~ 12771637 (+)
G2053243 NA non-coding upstream 27594 12754484 ~ 12754786 (+)
G2053240 NA non-coding upstream 34078 12748034 ~ 12748302 (+)
G2053239 NA non-coding upstream 34561 12747146 ~ 12747819 (+)
G2053223 NA non-coding upstream 55887 12725613 ~ 12726493 (+)
G2053382 NA non-coding downstream 78725 12874467 ~ 12924756 (+)
G2053387 NA non-coding downstream 153659 12949401 ~ 12952410 (+)
G2053388 LOC106580853 non-coding downstream 158112 12953854 ~ 12954147 (+)
G2053390 NA non-coding downstream 160996 12956738 ~ 12957782 (+)
G2053439 NA non-coding downstream 173340 12969082 ~ 12969315 (+)
nudt8 LOC106580825 other upstream 342902 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 644581 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1788792 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2004013 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2199295 10494894 ~ 10583085 (+)
G2053443 NA other downstream 182785 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 758998 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 2029778 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2801291 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3273828 15776205 ~ 16131560 (+)

Expression


Co-expression Network