G2053382


Basic Information

Item Value
gene id G2053382
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12874467 ~ 12924756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348519
tgagttccacatatttaataCAAAGAGAaacttaaacaaaacaaaatatatcaaTAAACGAACAACTAAaagtgactacgtggtgcacatgcacaaacacaaaacaatatcccacaaacacaggtgggaaaaatagctacttaaatatgatccccaattagagacaatgattaccagctgcctctaattgggaatcatacaaaacaccaacatagaagatataaactagaacacaacatagaaattataaactagaattccccctagtcacgccctgacctactacaccatagagaaacaagggctctacatggtcagggcgtgacaatgccAGTGGTATTCAacctgttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgctcatgtttcttggcccaagaaagtctcttcttattattggtgtcctttagtggtggtttctttgcagcaatttgaccatgaaggcctgattcacgcattcTCCTCTGTGAAGCATTTGGAATGCAATTTCttaggctggtaactccaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcatgtggtGATCCTCATTAGAGACAGTTTTATTATCAGCAAACTTTTATTGATGATACTTTTCCAACTCGCAGGATTAAATCAAATTAACTCCTCCTAAAAAAGATCCACACACGCTACGAAGCAATCCAGCACACATTCAGATAATGTTTTGTCTGAGATAACTTCACTGAATCCAGACCAAGGAAAATGTGTGAACAGTCTGTAAACATTAGAACACTCCATGATGCTAAAGTCGTCTTATACTGGGACTCTCTGGTTAGCTATACGCTACCAGGGCGTAGTTAGGAAACTTAAATACTGTGTACAGCATTATAAGTGTTTCCCTAAATTACTAAAACTGTCTATTAAAATATAAATCTATAACTTATATACTGGAGTAAATTTCAAGCACGCTATAAAAACGTTCAATAAACACTATGAAAACGTTAGAAAAACACTAGAAAAACGTTAGGAAAAACACAAAACGTTAGAGAAATGTTAGAAAACCACAAACGTAAAAACTAGAATAACGTTAGAAAAACACTAGAAAAAACGTTAGGGAAACACCAGGAAAAACACCAGTTAAAACAATAGGAAAACACCAGGAAAAACACCAGGAAAAACCATAGGAGAAACACTAGAAAAACATTAGGAAAACACCAGGAAAAACCATAGGAAAAACACTAGAAAAACATTAGGAAAACACCAGGAAAAACCATAGgaaaaacaacaggaaaacacTAGAAGAATGTTAGAAAAAAAACCAGAAGAACACCACCTTAGAGGACCTGACCCATGGGGAGAAACATGAA
>TU2348521
tgagttccacatatttaataCAAAGAGAaacttaaacaaaacaaaatatatcaaTAAACGAACAACTAAaagtgactacgtggtgcacatgcacaaacacaaaacaatatcccacaaacacaggtgggaaaaatagctacttaaatatgatccccaattagagacaatgattaccagctgcctctaattgggaatcatacaaaacaccaacatagaagatataaactagaacacaacatagaaattataaactagaattccccctagtcacgccctgacctactacaccatagagaaacaagggctctacatggtcagggcgtgacaatgccAGTGGTATTCAacctgttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgctcatgtttcttggcccaagaaagtctcttcttattattggtgtcctttagtggtggtttctttgcagcaatttgaccatgaaggcctgattcacgcattcTCCTCTGTGAAGCATTTGGAATGCAATTTCttaggctggtaactccaatgaacttatcctctgcagcagaggtaactctgggtcttcctttcatgtggtGATCCTCATTAGAGACAGTTTTATTATCAGCAAACTTTTATTGATGATACTTTTCCAACTCGCAGGATTAAATCAAATTAACTCCTCCTAAAAAAGATCCACACACGCTACGAAGCAATCCAGCACACATTCAGATAATGTTTTGTCTGAGATAACTTCACTGAATCCAGACCAAGGAAAATGTGTGAACAGTCTGTAAACATTAGAACACTCCATGATGCTAAAGTCGTCTTATACTGGGACTCTCTGGTTAGCTATACGCTACCAGGGCGTAGTTAGGAAACTTAAATACTGTGTACAGCATTATAAGTGTTTCCCTAAATTACTAAAACTGTCTATTAAAATATAAATCTATAACTTATATACTGGAGTAAATTTCAAGCACGCTATAAAAACGTTCAATAAACACTATGAAAACGTTAGAAAAACACTAGAAAAACGTTAGGAAAAACACAAAACGTTAGAGAAATGTTAGAAAACCACAAACGTAAAAACTAGAATAACGTTAGAAAAACACTAGAAAAAACGTTAGGGAAACACCAGGAAAAACACCAGTTAAAACAATAGGAAAACACCAGGAAAAACACCAGGAAAAACCATAGGAGAAACACTAGAAAAACATTAGGAAAACACCAGGAAAAACCATAGGAAAAACACTAGAAAAACAATAGGAAAACACCAGGAAAAAACCATAGGAAAAACACTAGAAAAACATTAGGAAATCACCAGGAAAAACCATAGAAAAACACTAGAAAAATGTTAGGAAAACACCAGGAAAAACCATAGgaaaaacaacaggaaaacacTAGAAGAATGTTAGAAAAAAAACCAGAAGAACACCACCTTAGAGGACCTGACCCATGGGGAGAAACATGAA
>TU2348520
acaaaatacaaaaaatagtTTGGCGGTAAAATATCTCTTAAAATGAATTTCAGTCAACAGCAATATCCCACAATCCACAGAAAACAGACACCAGATTATCAGCAAACTTTTATTGATGATACTTTTCCAACTCGCAGGATTAAATCAAATTAACTCCTCCTAAAAAAGATCCACACACGCTACGAAGCAATCCAGCACACATTCAGATAATGTTTTGTCTGAGATAACTTCACTGAATCCAGACCAAGGAAAATGTGTGAACAGTCTGTAAACATTAGAACACTCCATGATGCTAAAGTCGTCTTATACTGGGACTCTCTGGTTAGCTATACGCTACCAGGGCGTAGTTAGGAAACTTAAATACTGTGTACAGCATTATAAGTGTTTCCCTAAATTACTAAAACTGTCTATTAAAATATAAATCTATAACTTATATACTGGAGTAAATTTCAAGCACGCTATAAAAACGTTCAATAAACACTATGAAAACGTTAGAAAAACACTAGAAAAACGTTAGGAAAAACACAAAACGTTAGAGAAATGTTAGAAAACCACAAACGTAAAAACTAGAATAACGTTAGAAAAACACTAGAAAAAACGTTAGGGAAACACCAGGAAAAACACCAGTTAAAACAATAGGAAAACACCAGGAAAAACACCAGGAAAAACCATAGGAGAAACACTAGAAAAACATTAGGAAAACACCAGGAAAAACCATAGGAAAAACACTAGAAAAACAATAGGAAAACACCAGGAAAAAACCATAGGAAAAACACTAGAAAAACATTAGGAAATCACCAGGAAAAACCATAGGAAAAACACTAGAAAAATGTTAGGAAAACACCAGGAAAAACCATAGGAAAAACACTAGAAAAATGTTAGGAAAACACCAGGAAAAACCATAGgaaaaacaacaggaaaacacTAGAAGAATGTTAGAAAAAAAACCAGAAGAACACCACCTTAGAGGACCTGACCCATGGGGAGAAACATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348519 False 1404 lncRNA 0.37 3 12874467 12924756
TU2348521 False 1496 lncRNA 0.36 4 12874467 12924756
TU2348520 True 996 lncRNA 0.34 2 12923714 12924756

Neighbor

gene id symbol gene type direction distance location
LOC110507577 LOC106580842 coding upstream 19166 12817186 ~ 12855301 (+)
nop53 LOC106612613 coding upstream 60430 12802441 ~ 12814037 (+)
trnaa-ugc-186 NA coding upstream 78797 12795595 ~ 12795670 (+)
LOC118944739 NA coding upstream 83352 12782256 ~ 12791115 (+)
LOC110507572 LOC106580837 coding upstream 122039 12749517 ~ 12752428 (+)
LOC110507586 LOC106565025 coding downstream 62817 12987564 ~ 12988797 (+)
LOC118944675 NA coding downstream 140535 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 273099 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 291723 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 308775 13233531 ~ 13264437 (+)
G2053205 NA non-coding upstream 78725 12782380 ~ 12795742 (+)
G2053249 NA non-coding upstream 102830 12771433 ~ 12771637 (+)
G2053243 NA non-coding upstream 119681 12754484 ~ 12754786 (+)
G2053240 NA non-coding upstream 126165 12748034 ~ 12748302 (+)
G2053239 NA non-coding upstream 126648 12747146 ~ 12747819 (+)
G2053387 NA non-coding downstream 24645 12949401 ~ 12952410 (+)
G2053388 LOC106580853 non-coding downstream 29098 12953854 ~ 12954147 (+)
G2053390 NA non-coding downstream 31982 12956738 ~ 12957782 (+)
G2053439 NA non-coding downstream 44326 12969082 ~ 12969315 (+)
G2053446 NA non-coding downstream 59149 12983905 ~ 12984262 (+)
nudt8 LOC106580825 other upstream 434989 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 736668 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1880879 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2096100 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2291382 10494894 ~ 10583085 (+)
G2053443 NA other downstream 53771 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 629984 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1900764 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2672277 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3144814 15776205 ~ 16131560 (+)

Expression


Co-expression Network