G2053439


Basic Information

Item Value
gene id G2053439
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12969082 ~ 12969315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348580
ATTGTTTGGAAGATTCTGTTCTGACTTTCACAGACTAGAACTGGCAATACTGACCATTCAGAAGAAAGAGCCAAAGGTGTCTGTCGTGTACGATCTTCTGAATCTGATATGGACAACGTATCACTTCAGCGGAAAATCCAAACGAGAACTCTATGTTCTTGGGCAAGAGCTTGTCGGTGTGGATATTTGCACACCGTCAAGCAACAAGGGAACTCGCTGGATCCCCCATGTCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106579367 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348580 True 234 lncRNA 0.45 1 12969082 12969315

Neighbor

gene id symbol gene type direction distance location
rinl rinl coding upstream 76473 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 88574 12875801 ~ 12880508 (+)
LOC110507577 LOC106580842 coding upstream 113781 12817186 ~ 12855301 (+)
nop53 LOC106612613 coding upstream 155045 12802441 ~ 12814037 (+)
trnaa-ugc-186 NA coding upstream 173412 12795595 ~ 12795670 (+)
LOC110507586 LOC106565025 coding downstream 18258 12987564 ~ 12988797 (+)
LOC118944675 NA coding downstream 95976 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 228540 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 247164 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 264216 13233531 ~ 13264437 (+)
G2053390 NA non-coding upstream 11300 12956738 ~ 12957782 (+)
G2053388 LOC106580853 non-coding upstream 14935 12953854 ~ 12954147 (+)
G2053387 NA non-coding upstream 16672 12949401 ~ 12952410 (+)
G2053382 NA non-coding upstream 44326 12874467 ~ 12924756 (+)
G2053205 NA non-coding upstream 173340 12782380 ~ 12795742 (+)
G2053446 NA non-coding downstream 14590 12983905 ~ 12984262 (+)
G2053447 LOC106580848 non-coding downstream 15354 12984669 ~ 12985005 (+)
G2053448 NA non-coding downstream 16981 12986296 ~ 12986511 (+)
G2053451 NA non-coding downstream 20090 12989405 ~ 12989780 (+)
nudt8 LOC106580825 other upstream 529604 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 831283 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1975494 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2190715 10755190 ~ 10778403 (+)
rap1gap2a LOC106580794 other upstream 2385997 10494894 ~ 10583085 (+)
G2053443 NA other downstream 9212 12978527 ~ 12978923 (+)
LOC110507618 LOC107659943 other downstream 585425 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1856205 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2627718 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3100255 15776205 ~ 16131560 (+)

Expression


Co-expression Network