G2053447 (LOC106580848)


Basic Information

Item Value
gene id G2053447
gene name LOC106580848
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12984669 ~ 12985005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348589
TCCTCGTAGTCCACGCCGCCCCCCTTCGCAGTGCCCGCCTCCGTGTGATAGGGCAGGATCACCGTGCCGCGGGCGCCCGAGTTCCTCACCACTGAGATCTCCATGGTGCCAACACTCTCGCTGACGCGCACCAGCCGATCACGGAATGTGAAGATGCCAGCATGGTCGTCGTCCAGGATGGTCACCGTGGCGACCAGTGGCTCCACCAGACGGCCCTTGGGTCCCGCGCCTGGCTCATCACTCTCGAACATCCCCTCGGCGTCACCAATGCGCAGGTTGAGCAGCCGCACGAAAAAGTGCTCGTCCTCCTCGAAGATGTCATCATCGATGATGCCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348589 True 337 lncRNA 0.63 1 12984669 12985005

Neighbor

gene id symbol gene type direction distance location
rinl rinl coding upstream 92060 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 104161 12875801 ~ 12880508 (+)
LOC110507577 LOC106580842 coding upstream 129368 12817186 ~ 12855301 (+)
nop53 LOC106612613 coding upstream 170632 12802441 ~ 12814037 (+)
trnaa-ugc-186 NA coding upstream 188999 12795595 ~ 12795670 (+)
LOC110507586 LOC106565025 coding downstream 2568 12987564 ~ 12988797 (+)
LOC118944675 NA coding downstream 80286 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 212850 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 231474 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 248526 13233531 ~ 13264437 (+)
G2053446 NA non-coding upstream 407 12983905 ~ 12984262 (+)
G2053439 NA non-coding upstream 15354 12969082 ~ 12969315 (+)
G2053390 NA non-coding upstream 26887 12956738 ~ 12957782 (+)
G2053388 LOC106580853 non-coding upstream 30522 12953854 ~ 12954147 (+)
G2053387 NA non-coding upstream 32259 12949401 ~ 12952410 (+)
G2053448 NA non-coding downstream 1291 12986296 ~ 12986511 (+)
G2053451 NA non-coding downstream 4400 12989405 ~ 12989780 (+)
G2053453 LOC106612604 non-coding downstream 6279 12991284 ~ 12991696 (+)
G2053455 LOC106612604 non-coding downstream 7585 12992590 ~ 12992807 (+)
G2053443 NA other upstream 5746 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 545191 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 846870 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1991081 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2206302 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 569735 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1840515 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2612028 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3084565 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3389261 16374266 ~ 16376043 (+)

Expression


Co-expression Network