G2053453 (LOC106612604)


Basic Information

Item Value
gene id G2053453
gene name LOC106612604
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 12991284 ~ 12991696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348597
GTCTCTCCGGGTTTGAACACCAGCGTTCCCTCGCTGTACTCGTAGTCGGACCCAGCATTGGCTGAGCCGTCCTCGGTCCGGTAGTCTACATAGAAGGTGCTCTCCCCCAGGCCCCCTTGACACACCACAGCCAGCCTCAGTACGCCACAGTTCTCCATACACTGGCTGTGGGTGCTCTCGAACGCCAGGCGGCTGCACTCAGCCAGGTCGTCGTCCTCGCAGACCACTTCCTCGTCTACGGCGGCGGCGCGGCGGGAGTGGTCGGCGGCGTGCCTCTTGAGCACATTGCCGGCGCCGGTCATCATGCGCGTAGCCTGGATGCGGTAGAAGGCGCGGCTCTTCTGTTGATGGAGGAGGGCGTAGTAGTTGGCAAGATCTACCAGCTGATCCAGCTCCTTGTCCGGAAACTTCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348597 True 413 lncRNA 0.62 1 12991284 12991696

Neighbor

gene id symbol gene type direction distance location
LOC110507586 LOC106565025 coding upstream 2746 12987564 ~ 12988797 (+)
rinl rinl coding upstream 98675 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 110776 12875801 ~ 12880508 (+)
LOC110507577 LOC106580842 coding upstream 135983 12817186 ~ 12855301 (+)
nop53 LOC106612613 coding upstream 177247 12802441 ~ 12814037 (+)
LOC118944675 NA coding downstream 73595 13065291 ~ 13075518 (+)
LOC110507591 map4k1 coding downstream 206159 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 224783 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 241835 13233531 ~ 13264437 (+)
LOC118944728 LOC106580863 coding downstream 361033 13352729 ~ 13365310 (+)
G2053451 NA non-coding upstream 1504 12989405 ~ 12989780 (+)
G2053448 NA non-coding upstream 4773 12986296 ~ 12986511 (+)
G2053447 LOC106580848 non-coding upstream 6279 12984669 ~ 12985005 (+)
G2053446 NA non-coding upstream 7022 12983905 ~ 12984262 (+)
G2053455 LOC106612604 non-coding downstream 894 12992590 ~ 12992807 (+)
G2053460 LOC106580848 non-coding downstream 11766 13003462 ~ 13003929 (+)
G2053477 NA non-coding downstream 41861 13033557 ~ 13034088 (+)
G2053478 NA non-coding downstream 44722 13036418 ~ 13036642 (+)
G2053509 NA non-coding downstream 120545 13112241 ~ 13112899 (+)
G2053443 NA other upstream 12361 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 551806 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 853485 12127441 ~ 12137799 (+)
G2051034 NA other upstream 1997696 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2212917 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 563044 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1833824 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2605337 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 3077874 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3382570 16374266 ~ 16376043 (+)

Expression


Co-expression Network