G2053511


Basic Information

Item Value
gene id G2053511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13115203 ~ 13123073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348658
GGTGGGACTTGTGTTCCCATCCTGTCCTGACCCAGAAGTGCACCTGTGGTTGCTAGTTTTCACCTCATAACATGATGTGCATTTAATTGTAGTTGATCTGTGAACAGAGTTGAGGATAACAGCTTGCGACAGCCAACCAGATGAAAACCTGCACACTCAGGGGCACTGCGGGACCAGAATCTAGAGGGAGCAGTAGCGCTGTCCACTAATCACTTCCCAGGACCCTCCACCTGCAGCCCCTCCCTCTTCTACAGAGCCAATCAAACCACTGGCTTCAGACTCACTCCCCTCTTCTCCCAGTGACTGCAGGCTAGACCTAGAGGGGTGGCGAGTGTCTGCTCTGCATTGGGCCTGGCAAGCCTCtacgtacccccccccccccttccaccccgtccccctccccctcctgtgGTGTGCTCTTAGAGGTCACTCTCCCCGTAGAGGGCGGTGGAGAAGGACATGTAGTCGAGGGCTCCGGGCTTCGCGTCGGGGCCCGAGTAGGGCGCCATGCGGGCGATGCAGTACTCTGCCTGGTCTCCACATCGTAGCCCAGGCTGATCAGGCACGCCTTGAACTCCTCAGCCATCAGGCCCCCGCTGTGGTCCTGTGAGGTCACCATCAGCCAATTACAGACCACACCATGACGACGGAAGCCATGATGGAACCATCACAACACAGGGATGCCAGGTGGGAGTGGTCAGGTGATGGGGACACGGCAGGCAAAACGAGGGTGATgatgatggacagacagacaaacaaatgGATGTTAGATGTTAAACAATGACAACAGCCTACGGGGAAACACATCCGTGATactagacagacaggcacacCCACAGTGAGGGGTCAGCTTCTCCAAAGGAGAGCAAAGTGCTCTCCTTTGCTGTTTAAACGGTGTCCCCTATAGCTCTTTATGGGAATGACAAGTCCTCAAAGATCACCACAGTGCTACTGACAGGACAgcttcgtcccaaatggtaccctattccttataacCCTCAaattcaactctggacctcaaagctcCACGGCTCTTTCGCCACACTGTTCCTGTGAACAGGGACtgctttagacctgggacaccaggcgtgtgtagaacagaaaaccagcaggctccggacctcatagggtgatagttgaatacccctgccctatatagtgcactacatttgaccagagccatatgggtcctggtcaatagcagtgcactatatagggaatagggtgtcatttgggacacaaactcTGTCTTGATGTTGAGCCAAACACAGCATGCATAAAGACAGTGAGGTGAAGTGATGAGGTACGCTGTTGTGGGATGGGTGAGGTGAACTCGggggttaccccccccccccttatctcagGGCACTCCGCTCCACACAGCCCCAGCCACCTCCAACCCAGGGTGAAACACTACTAGTTCCACCTGTGAATGTCAACAAATAAGGAATAGGTTCGTCCTCACAAGTCTAGTCCATTTCTTAGTCCCACCTGAGTTTCCCTTCTGAAATAAGAGGGGGACTTCAGACTCGACACATACGGGAGTTAAAGTGTAAACACTTCTAGAGTAAGACACTCAACTGCAAAAGCCAGTGGAAATAACAGCATTCTCAGACATTTTTACGATGTTATTTTCTACAGAAAGATGCCCCCCTGTTCCCTCTCGCCTGATCCCCCATGTTGACCCCTGGTGTTGACCCCTGACCTTGTCAAAGTGGTTGAAGGAAGTGCGGTACTCATGCAGCTGCTCCTGGCTGATGCCCTTGGCGTCACGTGTCAGGATCTGGTTCTCGATCTCGTTGATGGTGCGGGCGATGGTGGTGAGGAGCTGCTCCCAGCCCACCCGCAGGTGCTGAgatggaggaaggggagagagagggagggtgggtgggaaagacggagagagagaacatacatTGAAGGTTAACCACATGAAGAAACGGTATTGAGTAAGGAGGAGAGATAGAAACGTAATATGTAGAACAGAGACGAATGGACAAACGGCTCTAAAAGAGGGAGGACACCAGAAACCGGCAGgctttcattgtaaataacaactgGTTCTCAACTGCCCGCCTGGTCAAAGAAAATATAAAAATAGAACAGACAATGAAAATCTGAAGAGAACAAAAAAGGATGGCGAAACATAGTGACCTATTCTCCACATAGAACCAACAGAGCAGGGTGGCAGCCCAAatagccccctattccctacacagtgcactacttattACCAGGCCTGGagcaaacgtagtgcactataaagggaacagggggCCATTTGG

Function

NR:

description
alpha-actinin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348658 True 2285 lncRNA 0.52 2 13115203 13123073

Neighbor

gene id symbol gene type direction distance location
LOC118944675 NA coding upstream 39685 13065291 ~ 13075518 (+)
LOC110507586 LOC106565025 coding upstream 126665 12987564 ~ 12988797 (+)
rinl rinl coding upstream 222594 12880635 ~ 12892609 (+)
sirt2 sirt2 coding upstream 234695 12875801 ~ 12880508 (+)
LOC110507577 LOC106580842 coding upstream 259902 12817186 ~ 12855301 (+)
LOC110507591 map4k1 coding downstream 74782 13197855 ~ 13216273 (+)
LOC110507592 LOC106580858 coding downstream 93406 13216479 ~ 13222270 (+)
LOC110507593 hif1a coding downstream 110458 13233531 ~ 13264437 (+)
LOC118944728 LOC106580863 coding downstream 229656 13352729 ~ 13365310 (+)
LOC110507076 LOC106580865 coding downstream 262976 13386049 ~ 13404009 (+)
G2053514 NA non-coding upstream 137 13113806 ~ 13115066 (+)
G2053510 NA non-coding upstream 1643 13112925 ~ 13113560 (+)
G2053509 NA non-coding upstream 2304 13112241 ~ 13112899 (+)
G2053478 NA non-coding upstream 78561 13036418 ~ 13036642 (+)
G2053477 NA non-coding upstream 81115 13033557 ~ 13034088 (+)
G2053513 actn4 non-coding downstream 3222 13126295 ~ 13135347 (+)
G2053540 NA non-coding downstream 60244 13183317 ~ 13186095 (+)
G2053563 NA non-coding downstream 107023 13230096 ~ 13230331 (+)
G2053564 NA non-coding downstream 108433 13231506 ~ 13231866 (+)
G2053443 NA other upstream 136280 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 675725 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 977404 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2121615 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2336836 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 431667 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1702447 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2473960 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2946497 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3251193 16374266 ~ 16376043 (+)

Expression


Co-expression Network