G2053622


Basic Information

Item Value
gene id G2053622
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 13323235 ~ 13323660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2348786
TGCCGGGCTATTGACAGGATCCGGACTCCAAAAGAACACATAGTAGATTGCCAGAATAAAGGCAGCTATTGACACGCATAGAAAATAAGCAATTGCCATCGCCACTTTAACCCAAATCTTTGTGGTTAAGTTGGCATGCTTCACCCGCTGGTCGCCCGGATAGCTCGGCCTTCTGTTCATGTTCCCGTTCTGCTTCACGGTGGTAACTTGTTTGTTGGCTTTCATCCTGCAATTGTTATATCCTTTTTCTGGCGTCGAATGTAGTCTGTTTCTTTGTCAGTGTCCAAAGCCTTCAAATTCTATCTTTCCCCTTCAAGTCAGGTGGGCATTGTGGAAACGCTGTCACTGCTCCTGATGGGACGATGCTTTAATTAACCCTCTCTATGAACAGGACGGGGCGTCTAGAGCGCACCAGCTATACAGAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2348786 True 426 lncRNA 0.47 1 13323235 13323660

Neighbor

gene id symbol gene type direction distance location
LOC110507593 hif1a coding upstream 58798 13233531 ~ 13264437 (+)
LOC110507592 LOC106580858 coding upstream 100965 13216479 ~ 13222270 (+)
LOC110507591 map4k1 coding upstream 106962 13197855 ~ 13216273 (+)
LOC118944675 NA coding upstream 247717 13065291 ~ 13075518 (+)
LOC110507586 LOC106565025 coding upstream 334697 12987564 ~ 12988797 (+)
LOC118944728 LOC106580863 coding downstream 29069 13352729 ~ 13365310 (+)
LOC110507076 LOC106580865 coding downstream 62389 13386049 ~ 13404009 (+)
LOC110507600 LOC106580866 coding downstream 94570 13418230 ~ 13425382 (+)
LOC110507601 ercc2 coding downstream 107813 13431473 ~ 13439015 (+)
ckmb LOC106612591 coding downstream 144542 13468202 ~ 13471952 (+)
G2053583 NA non-coding upstream 44747 13275990 ~ 13278488 (+)
G2053565 NA non-coding upstream 90905 13231981 ~ 13232330 (+)
G2053564 NA non-coding upstream 91369 13231506 ~ 13231866 (+)
G2053563 NA non-coding upstream 92904 13230096 ~ 13230331 (+)
G2053639 NA non-coding downstream 21973 13345633 ~ 13345860 (+)
G2053650 NA non-coding downstream 36426 13360086 ~ 13361770 (+)
G2053653 NA non-coding downstream 44089 13367749 ~ 13367972 (+)
G2053443 NA other upstream 344312 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 883757 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 1185436 12127441 ~ 12137799 (+)
G2051034 NA other upstream 2329647 10992985 ~ 10993588 (+)
LOC110507540 git1 other upstream 2544868 10755190 ~ 10778403 (+)
LOC110507618 LOC107659943 other downstream 231080 13554250 ~ 13575495 (+)
LOC110507180 LOC106612536 other downstream 1501860 14825520 ~ 14841123 (+)
G2056256 NA other downstream 2273373 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 2745910 15776205 ~ 16131560 (+)
G2056820 NA other downstream 3050606 16374266 ~ 16376043 (+)

Expression


Co-expression Network