G2054889 (LOC105030512)


Basic Information

Item Value
gene id G2054889
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 14373544 ~ 14373782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2350185
gtccctgctcatctgtgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtctgtactgtgagacgcctaagacagcgctacagggagacaggacggacagctgatcatcctcacagtggcagaccacgtgtaacaacacccgcacaggatcagtacatccgaacatcacacctgcgggacaggtacaggatggcaacaac

Function

NR:

description
uncharacterized protein LOC110538898, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2350185 True 239 lncRNA 0.54 1 14373544 14373782

Neighbor

gene id symbol gene type direction distance location
LOC110507081 LOC106612519 coding upstream 1234 14371163 ~ 14372310 (+)
LOC110507182 LOC106580908 coding upstream 2816 14366509 ~ 14370728 (+)
LOC110507624 LOC106580907 coding upstream 29052 14262055 ~ 14344492 (+)
LOC110507623 pid1 coding upstream 259963 14060874 ~ 14113581 (+)
LOC110507622 LOC106580885 coding upstream 314282 13991372 ~ 14059262 (+)
LOC110507158 LOC106580945 coding downstream 70597 14444379 ~ 14526200 (+)
LOC110507181 LOC106580921 coding downstream 369281 14743063 ~ 14775758 (+)
LOC110507180 LOC106612536 coding downstream 453288 14825520 ~ 14841123 (+)
LOC110507171 usf1 coding downstream 475023 14848805 ~ 14853324 (+)
LOC110507163 LOC106580923 coding downstream 496328 14870110 ~ 14922494 (+)
G2054876 NA non-coding upstream 22836 14350155 ~ 14350708 (+)
G2054875 NA non-coding upstream 23789 14349408 ~ 14349755 (+)
G2054874 NA non-coding upstream 24799 14348518 ~ 14348745 (+)
G2054872 NA non-coding upstream 26372 14346968 ~ 14347172 (+)
G2054891 NA non-coding downstream 1022 14374804 ~ 14375098 (+)
G2054895 NA non-coding downstream 10453 14384235 ~ 14384465 (+)
G2054899 NA non-coding downstream 17493 14391275 ~ 14392330 (+)
G2054903 NA non-coding downstream 29643 14403425 ~ 14404129 (+)
G2055102 NA non-coding downstream 96330 14470112 ~ 14470417 (+)
LOC110507618 LOC107659943 other upstream 798049 13554250 ~ 13575495 (+)
G2053443 NA other upstream 1394621 12978527 ~ 12978923 (+)
nudt8 LOC106580825 other upstream 1934066 12436060 ~ 12439501 (+)
G2051018 LOC106580809 other upstream 2235745 12127441 ~ 12137799 (+)
G2051034 NA other upstream 3379956 10992985 ~ 10993588 (+)
G2056256 NA other downstream 1223251 15597033 ~ 15597651 (+)
LOC110507626 LOC106612913 other downstream 1695788 15776205 ~ 16131560 (+)
G2056820 NA other downstream 2000484 16374266 ~ 16376043 (+)
LOC110507087 LOC106612902 other downstream 2017239 16391021 ~ 16410705 (+)

Expression


Co-expression Network