G2056114


Basic Information

Item Value
gene id G2056114
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 15371348 ~ 15372335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2351542
CATCTGAAAATGTTATAATTTCATGTCCAAGGTAAAAactttacaaaaataaatacctttaaaaaagatagctacaataataataataatatagtatTATGGTCCTTCACTGAAGGTATATCATATTGCCTTTTTTGTTTTATGACATACAAAACTGGAATGAGAAATCAAACATATACATAGATATCTGACAAACAATAGAGCATTCTTCGCATTATgaataataacattttaaaacacaACTATGACATTATTACAAAGGAGTTGTTCTTTATGCAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT
>TU2351543
ttaccattttattgtagACATAAATCTCAAAGACAGCAGCATCTGAAAATGTTATAATTTCATGTCCAAGGTAAAAactttacaaaaataaatacctttaaaaaagatagctacaataataataataatatagtatTATGGTCCTTCACTGAAGGTATATCATATTGCCTTTTTTGTTTTATGACATACAAAACTGGAATGAGAAATCAAACATATACATAGATATCTGACAAACAATAGAGCATTCTTCGCATTATgaataataacattttaaaacacaACTATGACATTATTACAAAGGAGTTGTTCTTTATGCAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT
>TU2351547
CCTTTTTTGTTTTATGACATACAAAACTGGAATGAGAAATCAAACATATACATAGATATCTGACAAACAATAGAGCATTCTTCGCATTATgaataataacattttaaaacacaACTATGACATTATTACAAAGGAGTTGTTCTTTATGCAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT
>TU2351548
CAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT
>TU2351549
CCCATCTAATGAGAAGATTGAACAATGTGTGTAGTTTGCCCATATTTTTATTCTCTGTGTTTAACCAGCAGACTGCAGTGGAAGGAGAAGCAGGCCTGATGTAGGCCAAACATAGCTAAAGTCGGTCATTAACTTTCCAAACGGGTAAAAACAAGACACTCAATGCTTACAGCATATAGTAAAATGTGATGTattttaccattttattgtagACATAAATCTCAAAGACAGCAGCATCTGAAAATGTTATAATTTCATGTCCAAGGTAAAAactttacaaaaataaatacctttaaaaaagatagctacaataataataataatatagtatTATGGTCCTTCACTGAAGGTATATCATATTGCCTTTTTTGTTTTATGACATACAAAACTGGAATGAGAAATCAAACATATACATAGATATCTGACAAACAATAGAGCATTCTTCGCATTATgaataataacattttaaaacacaACTATGACATTATTACAAAGGAGTTGTTCTTTATGCAAATAGATCATATTTTACACATGTTTATAATGAATTTGGGTGTACTTCCAATTCTCTGTAGCCATAGAATTTCTTTAAAACACTACATAAAAAAGGTGCAGAACAGAGGAAAAGTCCCCTGTTACACTTTTGCCTCAGATCAGATTCCTGACCATTGTCTATGCTAAACAACATTTTACACAAAGAAAGTGTAAACTCAAACTaaagtatttttttaatgaaCACTAAAATGTCTGGTTCATTCTTACTACTAACTATGCTGGTTGCTTTTTTGTTACAAAGTACATTCTTCTATTTAGTGTCTGTCAACGTCTAATCTCGGAAGCCCAGAACTAAAATCGTAATTGCGTCAGATTATGTTACGTAGTCTGTCCATGAGAGATTAGTTAATAGAAGACCTAATCACCTGTATGATTTGAATGATAATGGGAGAATTAACATTTATCTGTAAGCATATCAGTACCACATATCATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2351542 False 754 lncRNA 0.30 1 15371348 15372101
TU2351543 False 793 lncRNA 0.30 1 15371348 15372140
TU2351547 False 626 lncRNA 0.31 1 15371348 15371973
TU2351548 False 478 lncRNA 0.33 1 15371348 15371825
TU2351549 True 988 lncRNA 0.32 1 15371348 15372335

Neighbor

gene id symbol gene type direction distance location
LOC110507161 LOC106580930 coding downstream 12973 15326868 ~ 15358375 (-)
LOC110507168 LOC106612549 coding downstream 168574 15198498 ~ 15202774 (-)
LOC110507178 LOC106580927 coding downstream 175512 15187693 ~ 15195836 (-)
LOC110507165 bco2a coding downstream 196229 15169327 ~ 15175119 (-)
LOC110507083 sorl1 coding downstream 210279 15090753 ~ 15161069 (-)
LOC118944779 NA coding upstream 110242 15482577 ~ 15486845 (-)
LOC110507175 NA coding upstream 130377 15502712 ~ 15522529 (-)
LOC110507169 LOC106580935 coding upstream 181335 15553670 ~ 15558545 (-)
LOC110507155 LOC106580939 coding upstream 231834 15604169 ~ 15714610 (-)
LOC110507085 LOC106580950 coding upstream 396040 15768375 ~ 15769382 (-)
G2055985 NA non-coding downstream 192428 15178693 ~ 15178920 (-)
G2055984 NA non-coding downstream 193609 15177513 ~ 15177739 (-)
LOC110507187 NA non-coding downstream 409464 14960014 ~ 14962018 (-)
G2055842 NA non-coding downstream 439108 14926331 ~ 14932240 (-)
G2056135 NA non-coding upstream 32281 15404616 ~ 15404933 (-)
G2056141 NA non-coding upstream 37202 15409537 ~ 15409778 (-)
G2056149 NA non-coding upstream 55562 15427897 ~ 15428308 (-)
G2056359 NA non-coding upstream 134944 15507279 ~ 15507607 (-)
LOC110507082 LOC106580920 other downstream 836108 14532256 ~ 14719525 (-)
LOC110507619 LOC106580882 other downstream 1613651 13755242 ~ 13757825 (-)
LOC110507606 LOC106580867 other downstream 1843913 13472445 ~ 13527504 (-)
G2054301 NA other downstream 1898935 13456485 ~ 13472413 (-)
G2054307 LOC106612521 other downstream 1967349 13401764 ~ 13403999 (-)
G2056115 NA other upstream 3880 15376215 ~ 15376515 (-)
LOC110507646 LOC106612894 other upstream 1623225 16756597 ~ 17064214 (-)
LOC110507661 LOC106581010 other upstream 2092186 17464437 ~ 17481646 (-)
G2058724 NA other upstream 2550007 17922342 ~ 17922752 (-)
LOC110507754 LOC106581192 other upstream 5541779 20913520 ~ 20924130 (-)

Expression


Co-expression Network