G2057416


Basic Information

Item Value
gene id G2057416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 16896399 ~ 16900472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2353000
GCTTTATGACATGATAATCCTACAGAGTGATAACAGGGCAAAACACCACTCTGTCTCCTTGCACTGCTTCATGAACTGTGTTTAATATAGTAGCATTTCCTATTCACATAGCAGTGTTTCCTTAACTGTagtcccctcttctcttctcttccatttTCCAGCCTACATCATTCCCagatctctctctgccctcctatgcagcctctctccctccccctgcctctctctccacgggATTCACATTCCACACGATACAAGCAGTCCGGCATCACTGAACCCTGGGATAGTCTGAACGCTGGGAGACGCTGCTCAGTCTAAAACAGGAAAGAAACaaagagtagaaacagagagtagagagagtagaaacagagtagaaacagagagtagaaacagagagtagagagagagtagaaacaaagagtagagagagagagtagaaacagagaagacagagagagtagaaacagataGTAGAGAGAAagtagaaacagagagtagaaacagagagtagagagtagaaaaagagagtagaaacagtagaaacagagagtagagagagagagtagaaacagagtcGAGAGAAAGTAGaaacagagtagagagagtagaaacagagagtagaaagggaagagacagagagtagagacagagtggagagagagtagagacagagcaTAGAGGGAGATAGTAGAaacagagtagagacagagagtagagacagagagtagagacagagagtagagagaaagcgtagagagagagtagaaacagggaggagagagagagagtagaaacagagagtagagagagagtagaaacagagtagagagagagtagatatagagtagagttagagtaaagacaaagtagagagagagagtagagagagtagaaacagagcgtaaagacagagagtagagagagagtgagacagatagtagagagagagtagagagagagtagagacagagagtagagagagagtagagttagagtaaagacagagtagagagagagtagaaacagagagtagagacagataGTAGAAacaaagagtagagagagagtagaaacagagagtagagacagagagtagagaaagagtagggagagagtagaaacagagtagaaacagagagtagaaacagagagtagagagagagtagaaacaaagtagagagagtagaaacagagtagaaacagagagtagaaacagagagtagagagagagtagaaacaaagagtagagagagagagagtagaaacagagaatacagagagagtagaaacagataGTAGAGAGAAagtagaaacagagagtagaaacagagagtagagagtagaaaaagagagtagaaacagtagaaacagagagtagagagagagagtagaaacagagagtagagagagagtagagagagagtagagttagAGTAAAgacaaagtagagagagagtagagagagtagaaacagagagtaaagacagagagtagagagagagtgagacagagagtagagagagagtagagagagagtatagacagaagagagagagtagaaacagagagtagagacagagagtagagaaagagtagagagacagtagaaacagagagtagaaacagagagtagagagagagcgtaaaagcagagtagagagagagtagaaacagagagtagaaacagagtagagagagaatagaaacagagagtagagagagagtagaaacagagagtagagagagagagcgtagaaaccgagaatacagagagagagagacagagtagagacagagagtagaaacagagagtagaaacagatagtagagagacagagtagagggagagagtagagagagagagtagaaacagagtcGAGAGAAAGTAGaaacagagtagagagagtagaaacagagagtagagacagagagtagaaagagaagagacagagagtagagacagagagtggagagagagagtagagagaaagtgtagagagagtagaaacagagaggagagagagagagtagaaacagagagtagagagagagtagagagagagtagaaacagagagtagagacagagagtagagagagagagtagaaacagagagtagagacagagagtagagacagagagtagagagagagagtagaaacagagagtagaaacagagtaaaaacagagagtagagagagagtagaaacagagagtagagagagaatagagagagaatagagacagagattagagacagagtagagacaggGAGTAGAGTGAGAGAGTCgaaagagagtagagacagagtagggagagagtagaaatagaaagtaaagagagagtagagacaaaGTCTCATTACTACACCCTCTATACCTGGAGATCAGCCCTGGCCTAGATACTCTGTAAGTACAGTAGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2353000 True 2423 lncRNA 0.42 4 16896399 16900472

Neighbor

gene id symbol gene type direction distance location
LOC110507649 mb211 coding upstream 27585 16866461 ~ 16868814 (+)
LOC110507645 LOC106580976 coding upstream 148719 16726245 ~ 16747680 (+)
LOC110507643 LOC106580974 coding upstream 174922 16705808 ~ 16721477 (+)
LOC110507104 ints4 coding upstream 207979 16677716 ~ 16688420 (+)
LOC110507103 LOC106580982 coding upstream 237697 16657763 ~ 16658702 (+)
trnag-ucc-232 NA coding downstream 306364 17206836 ~ 17206907 (+)
LOC110507653 LOC106580984 coding downstream 319016 17219488 ~ 17227085 (+)
LOC110507657 LOC106581017 coding downstream 346834 17247306 ~ 17260399 (+)
dcnl4 dcnl5 coding downstream 365717 17266189 ~ 17287155 (+)
LOC110507110 LOC106581014 coding downstream 392850 17293322 ~ 17321281 (+)
G2057315 NA non-coding upstream 182215 16713731 ~ 16714184 (+)
G2057304 NA non-coding upstream 205672 16689584 ~ 16690727 (+)
G2057302 LOC106612898 non-coding upstream 218811 16671078 ~ 16677588 (+)
G2057174 NA non-coding upstream 428151 16442577 ~ 16468248 (+)
LOC110507087 LOC106612902 non-coding upstream 502053 16391021 ~ 16410705 (+)
G2057476 NA non-coding downstream 95088 16995560 ~ 17001137 (+)
G2057495 NA non-coding downstream 143501 17043973 ~ 17075854 (+)
G2057494 NA non-coding downstream 169418 17069890 ~ 17072680 (+)
G2057533 NA non-coding downstream 192788 17093260 ~ 17095885 (+)
G2057553 NA non-coding downstream 229651 17130123 ~ 17130402 (+)
G2056820 NA other upstream 520356 16374266 ~ 16376043 (+)
LOC110507626 LOC106612913 other upstream 819060 15776205 ~ 16131560 (+)
G2056256 NA other upstream 1298748 15597033 ~ 15597651 (+)
LOC110507180 LOC106612536 other upstream 2062811 14825520 ~ 14841123 (+)
G2057561 NA other downstream 312638 17213110 ~ 17219017 (+)
G2057788 NA other downstream 655032 17555504 ~ 17566384 (+)
G2057804 NA other downstream 683498 17583970 ~ 17585924 (+)
G2057945 NA other downstream 973329 17873801 ~ 17875832 (+)
G2059435 NA other downstream 1670627 18571099 ~ 18594842 (+)

Expression


Co-expression Network