G2057743 (LOC106581008)


Basic Information

Item Value
gene id G2057743
gene name LOC106581008
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 17550789 ~ 17551511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2353393
AGAGGGGCAGCTGTAGGAGTCATGAGGGGGGTGACGTACAGTAGAGGGGATTCAGTACAAAAGACTCACATCTGCAGACCTGTGTCTCACTTCAGAAAACCAAACACACCCTTCTTTGTTTCATGTAGTGCATCAATACACTATATAGCAACTGTAGACCAAAACAGGCATAGCATACTGTAGCCTACAATACGTTTATTTTACTAGATGTTACTATGTACCCAGAGTTCTTCAGACCTCATGGACGAgagtcaataaagacatgtgtgtctgtgaggtacGTACCTGAGACCACTCTCGTAACTTTGGTGACCTTGGGCTCTCCCTCAATCACCCTTGTCACCTTGGTGATGATAGGCTCTCCCTCAATCACCCTTGTCACCTTGGTGATGCTAGGCTCTCCCTCAATCACCCTTGTCACCTTGGTGATGGTAGGCTCTCCCTCAATCACCCTTGTCACCTTGGTGATGGTAGGGTCCCTTTCAATAACCCTAGTTACATGGGTCACATCAGGa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2353393 True 515 lncRNA 0.47 2 17550789 17551511

Neighbor

gene id symbol gene type direction distance location
si:dkey-56d12.4 NA coding upstream 66660 17481701 ~ 17484129 (+)
LOC110507111 LOC106581013 coding upstream 172456 17321743 ~ 17379119 (+)
LOC110507110 LOC106581014 coding upstream 229508 17293322 ~ 17321281 (+)
dcnl4 dcnl5 coding upstream 263634 17266189 ~ 17287155 (+)
LOC110507657 LOC106581017 coding upstream 290390 17247306 ~ 17260399 (+)
LOC110507114 LOC106581006 coding downstream 118943 17670454 ~ 17780391 (+)
LOC110507666 LOC106581002 coding downstream 234764 17786275 ~ 17814495 (+)
brip1 brip1 coding downstream 649285 18200796 ~ 18243226 (+)
LOC118944759 NA coding downstream 817752 18369263 ~ 18378985 (+)
LOC110507678 LOC106612861 coding downstream 1195684 18747195 ~ 18770034 (+)
G2057784 NA non-coding upstream 1942 17548605 ~ 17548847 (+)
G2057783 NA non-coding upstream 2889 17547267 ~ 17547900 (+)
G2057771 NA non-coding upstream 22187 17528309 ~ 17528602 (+)
G2057644 LOC106581011 non-coding upstream 89030 17455975 ~ 17461759 (+)
G2057788 NA non-coding downstream 3993 17555504 ~ 17566384 (+)
G2057810 NA non-coding downstream 54551 17606062 ~ 17609718 (+)
G2057813 NA non-coding downstream 55976 17607487 ~ 17610380 (+)
G2057825 NA non-coding downstream 72764 17624275 ~ 17624569 (+)
G2057839 NA non-coding downstream 97948 17649459 ~ 17649780 (+)
G2057561 NA other upstream 334246 17213110 ~ 17219017 (+)
LOC110507087 LOC106612902 other upstream 1140420 16391021 ~ 16410705 (+)
G2056820 NA other upstream 1174746 16374266 ~ 16376043 (+)
LOC110507626 LOC106612913 other upstream 1473450 15776205 ~ 16131560 (+)
G2056256 NA other upstream 1953138 15597033 ~ 15597651 (+)
G2057804 NA other downstream 32459 17583970 ~ 17585924 (+)
G2057945 NA other downstream 322290 17873801 ~ 17875832 (+)
G2059435 NA other downstream 1019588 18571099 ~ 18594842 (+)
G2059714 NA other downstream 1540436 19091947 ~ 19092272 (+)

Expression


Co-expression Network