G2059380


Basic Information

Item Value
gene id G2059380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18508219 ~ 18509929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2355202
AGGCACACAACATTAGATCAACACTGACAATGTCCATATATTATACAATCCATCAATGTCAATATCGTGTTATAATGTCATCACGTAATGTAAACAATGCAACAATGTTACTGTACAGCAATTTTAACATTACCGTGCATACAGCACAGGACAGCATGGAAACAGACGTTACAAATATCACGGCTACAGAAGAATATCCTAAATAAATTTGAACGTTGTGAGCGACAGTCTAAACAAAAGCGCTCCTGGTAGGGGTGTGAGAGGGGCTTAGCTAGCATATATCTCTACCATAAAGACATTAACAACAGGACAGGGGTGATGGAGGAAAACATCTGACTGTCCACTGAGAGTACAGAACATTGGGAACACctgatctttccatgacatagactgaccaggtgaaagctgtgatcccttattgatgtcacctgttaaatcctcttcaatcagtgtagatgaaggggaggagacgggttaaagaaggatttttaagccttgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaaggcaaaagaTTGAAGAGCctttatggtagtaggtgccagacgcactggtttgagtgtgtcaagaactgcaacgttgctgggtttttccacacacaacagtttcccgtgtgtatcaagaattgtctactaccacccaaaggacatccagccaactttgcacaactgtgggaagtattggcgTGAACATGGGcaggcatccctgtggaaagctttcgacacctGGCACAGTCCATGCCCTgataaattgaggctgttctgagggcaaaaggggggagcaactcaatattatgaaggtgttcctaatgttttgtacactcagtgtagtgttggagagggaaggggggcaTATtttgacagagggaggagagcgcTACTCTCATACATAGGAGGTCATCTCCACATAGCCCTGACCTTCATGTGCACCGCCTTGgtcaaaaagaaaagaaaaacacatGTTCTGCTCCCTGTTCCCAGCCCCTAACGGCAAATACTGTTCAGTGTTCACTGTGCCTACCCATATCTAGCAATACAACGCATCCAGAACACAACGAGAGAGGCAGCTGGGGCCACTTTCACTCTCACAGTTTCTCTCAGTATACAGCTGCAGGCTAGTAGTACCCTGACACTGCACTGACCTGATGGCCATGTTGGGGTCAATCTCTGAGCTGACATGGAGACGACTGTGTCTATAGGCTCCTGAACACAACTTTGGACTGCTGCAACCGGTGTGCTTTtttttacagtggggcaaagggTCTCTTCTAGTGGTCCTACCCtcatggctgactggctggctggctggctggcacagacagacagacagacagaccctgacagacagacagacagaccctgacagacagacagacagacagacgtcctCTGTACTCTATGCAACCACCCAGCGCTGGCCCGtggtcctctcctccatctctcctctcgcCTTTCCTCTTCACTCTCTCACAGTGATGGCAAATCAATAAAGGAAGTGGAGGGTCGGAGATGGTGAAATGGACATGCATGCTTTAGAATATAAAAGGAGAGCAAAATAAATCGAAATgacaaataaatataaatacgGGCAGAGCGGACCTCCTTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2355202 True 1643 lncRNA 0.47 3 18508219 18509929

Neighbor

gene id symbol gene type direction distance location
LOC118944759 NA coding upstream 129705 18369263 ~ 18378985 (+)
brip1 brip1 coding upstream 264993 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 693724 17786275 ~ 17814495 (+)
LOC110507114 LOC106581006 coding upstream 727828 17670454 ~ 17780391 (+)
si:dkey-56d12.4 NA coding upstream 1024090 17481701 ~ 17484129 (+)
LOC110507678 LOC106612861 coding downstream 237266 18747195 ~ 18770034 (+)
LOC110507679 ripl1 coding downstream 260897 18770826 ~ 18789238 (+)
LOC110507680 LOC106581030 coding downstream 279623 18789552 ~ 18796852 (+)
sarm1 LOC106612856 coding downstream 295241 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 328303 18838232 ~ 18849272 (+)
G2059292 NA non-coding upstream 128509 18379063 ~ 18379710 (+)
G2059153 NA non-coding upstream 247578 18260387 ~ 18260641 (+)
G2059152 NA non-coding upstream 248170 18259831 ~ 18260049 (+)
G2059102 NA non-coding upstream 254758 18253200 ~ 18253461 (+)
G2059402 NA non-coding downstream 22566 18532495 ~ 18600174 (+)
G2059416 NA non-coding downstream 39836 18549765 ~ 18551608 (+)
G2059594 NA non-coding downstream 343637 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 413157 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 456393 18966322 ~ 18966840 (+)
G2057945 NA other upstream 632387 17873801 ~ 17875832 (+)
G2057804 NA other upstream 922295 17583970 ~ 17585924 (+)
G2057788 NA other upstream 941835 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1291676 17213110 ~ 17219017 (+)
LOC110507087 LOC106612902 other upstream 2097850 16391021 ~ 16410705 (+)
G2059435 NA other downstream 61170 18571099 ~ 18594842 (+)
G2059714 NA other downstream 582018 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 683528 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1548314 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1795453 20305382 ~ 20306608 (+)

Expression


Co-expression Network