G2059416


Basic Information

Item Value
gene id G2059416
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 18549765 ~ 18551608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2355244
aatctcactttctatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctcGTTATCCATCTCTCTCGttatcaatctctctctttctattcatctctctttctatccatctctctttctatccatctctctctttctatccatctctctctttctatccatctctctttctatccatctctctctttatcaatctctctttctatccatctctctctttatatccatctctctttatatccatctctctctttatatccatctctctttatatccatctctctttatatccatctctctctttatccatctctctttatatccatctctctctttatccatctctctctttatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctctctctttatatccatctctctatctctctttctatccatctctgtctttacccatctctctctctctctttatatccatctctctctttatatccatctctctttatatccatctctctctttctatccatctctctttctatccatctctctctttacccatctctctctctctctttatatccatctctctctttatatccatctctctatccatctctctctctctatctttctatccatctctctttctatccatctctctctttacccatctctctctttctatccatccatctctctctttctatccatccatctctctctttctatccacccatctctctctttctatccatctctctctctctctttctatccatccatctctctctttctatccatctctctttctatccatctctctctttatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctattcatccctctctttctatccatctctttctatccatccctctctttctatccatctctctctcgcttcgtCTCCTCGTCGTGAGTGCTTTCTCATTTTCCATCGCCTATTCATTTTTAAGGAGGGAGTGTGTTGGAGTGCGGTGGCGTGCATTAGCGTTACTCTGCTCTGCCTCTAGCTAGGTGTAAAAAATACCATTACAGCAGCCGGCTGTGGGGCCATCCGGATCGATCCATTATGGAGCTGAGAGGGCCG
>TU2355247
aatctcactttctatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctcGTTATCCATCTCTCTCGttatcaatctctctctttctattcatctctctttctatccatctctctttctatccatctctctctttctatccatctctctctttctatccatctctctttctatccatctctctctttatcaatctctctttctatccatctctctctttatatccatctctctttatatccatctctctctttatatccatctctctttatatccatctctctttatatccatctctctctttatccatctctctttatatccatctctctctttatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctttctatccatccctctctttctatccatctctctctcgcttcgtCTCCTCGTCGTGAGTGCTTTCTCATTTTCCATCGCCTATTCATTTTTAAGGAGGGAGTGTGTTGGAGTGCGGTGGCGTGCATTAGCGTTACTCTGCTCTGCCTCTAGCTAGGTGTAAAAAATACCATTACAGCAGCCGGCTGTGGGGCCATCCGGATCGATCCATTATGGAGCTGAGAGGGCCG
>TU2355252
aatctcactttctatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctctttctatccatctctctctttatccatctctctctctttctatccatctctctctttctatccatctctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctttctatccatccctctctttctatccatctctctctcgcttcgtCTCCTCGTCGTGAGTGCTTTCTCATTTTCCATCGCCTATTCATTTTTAAGGAGGGAGTGTGTTGGAGTGCGGTGGCGTGCATTAGCGTTACTCTGCTCTGCCTCTAGCTAGGTGTAAAAAATACCATTACAGCAGCCGGCTGTGGGGCCATCCGGATCGATCCATTATGGAGCTGAGAGGGCCG
>TU2355254
aatctcactttctatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttatccatctctctctttctatccatccatctctctctttctatccatccatctctctctttctatccacccatctctctctttctatccatctctctctctctctttctatccatccatctctctctttctatccatctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatctctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatccctctctttctatccatctctttctatccatccctctctttctatccatctctctctcgcttcgtCTCCTCGTCGTGAGTGCTTTCTCATTTTCCATCGCCTATTCATTTTTAAGGAGGGAGTGTGTTGGAGTGCGGTGGCGTGCATTAGCGTTACTCTGCTCTGCCTCTAGCTAGGTGTAAAAAATACCATTACAGCAGCCGGCTGTGGGGCCATCCGGATCGATCCATTATGGAGCTGAGAGGGCCG

Function

NR:

description
RAB6-interacting golgin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2355244 False 1359 lncRNA 0.40 3 18549765 18551608
TU2355247 False 879 lncRNA 0.42 4 18549765 18551608
TU2355252 False 531 lncRNA 0.45 5 18549765 18551608
TU2355254 True 693 lncRNA 0.44 5 18549765 18551608

Neighbor

gene id symbol gene type direction distance location
LOC118944759 NA coding upstream 171251 18369263 ~ 18378985 (+)
brip1 brip1 coding upstream 306539 18200796 ~ 18243226 (+)
LOC110507666 LOC106581002 coding upstream 735270 17786275 ~ 17814495 (+)
LOC110507114 LOC106581006 coding upstream 769374 17670454 ~ 17780391 (+)
si:dkey-56d12.4 NA coding upstream 1065636 17481701 ~ 17484129 (+)
LOC110507678 LOC106612861 coding downstream 195587 18747195 ~ 18770034 (+)
LOC110507679 ripl1 coding downstream 219218 18770826 ~ 18789238 (+)
LOC110507680 LOC106581030 coding downstream 237944 18789552 ~ 18796852 (+)
sarm1 LOC106612856 coding downstream 253562 18805170 ~ 18820231 (+)
LOC110507684 LOC106581033 coding downstream 286624 18838232 ~ 18849272 (+)
G2059380 NA non-coding upstream 39836 18508219 ~ 18509929 (+)
G2059292 NA non-coding upstream 170055 18379063 ~ 18379710 (+)
G2059153 NA non-coding upstream 289124 18260387 ~ 18260641 (+)
G2059152 NA non-coding upstream 289716 18259831 ~ 18260049 (+)
G2059594 NA non-coding downstream 301958 18853566 ~ 18855198 (+)
G2059610 NA non-coding downstream 371478 18923086 ~ 18923594 (+)
G2059661 NA non-coding downstream 414714 18966322 ~ 18966840 (+)
LOC110507689 LOC106581036 non-coding downstream 437673 18956560 ~ 18991625 (+)
G2059717 NA non-coding downstream 542474 19094082 ~ 19094319 (+)
G2057945 NA other upstream 673933 17873801 ~ 17875832 (+)
G2057804 NA other upstream 963841 17583970 ~ 17585924 (+)
G2057788 NA other upstream 983381 17555504 ~ 17566384 (+)
G2057561 NA other upstream 1333222 17213110 ~ 17219017 (+)
LOC110507087 LOC106612902 other upstream 2139396 16391021 ~ 16410705 (+)
G2059435 NA other downstream 19491 18571099 ~ 18594842 (+)
G2059714 NA other downstream 540339 19091947 ~ 19092272 (+)
G2059777 LOC106581039 other downstream 641849 19193457 ~ 19195184 (+)
LOC110507725 LOC106581066 other downstream 1506635 20058224 ~ 20059968 (+)
G2061226 NA other downstream 1753774 20305382 ~ 20306608 (+)

Expression


Co-expression Network