G2060507


Basic Information

Item Value
gene id G2060507
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 19709888 ~ 19728046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2356476
AAACTAGAATCCTCTCAGATATGCATAACATTCTGGCCCCTAATCTAGCACACTAGAAAAATTATACGTAATTAATAAAACAAAATGTTCAATTCATACATACATAATCTACAATACATGCCAGAGCAGTATCGAAAGAATTTCAGTTTTACTTTTACATTTTTGTAAAACTAAAAACATACAAATcacttaaaaaacaaaaaacactgtttcaaaGGTATTGAGTACAAACCAACACAATGTATGCTATGAATATCACTCACGATATCACCTACAAATCTTTTGAACACCTTTGGATTGATTGTCATCAGCTTTACCACATTCAGAGCAACACCTGCTCATCATACTTCACAAGTTTGTCAGAAATCAAGGTAAGAAGGCTACTTACACCATGGCCCTTAAAATATAGTCAAAGTTGAAGATGGCAGATGGACTGTGAAACctgtgcccacacacacacatgctatgcCACTGCTATTTCATCCAGGGATATAAATAGCAGCAGAGATGATAGAAAGCCAGAGGAGGCAGTTCTGAAGATACATGGCCAAAGTTTATCAGCACTTTACTAACCACACCCCTTGAAGCTCAACCCTTGGTTTGACATGTCAGTATGCGAAGAGCTCCAACTTTGGTACACACAGACACTAAGCACATGGAGAGGGATGTACAGTTACAGGAATGGTGCGGGTTTTGACTTGGAGCACTTCTCTGCATTCAAAGCATGCTTAATGGCTCTAGTTGGATAATCTTTCATATTCTCCTATATACCCAAACATCTCTGGCAGCATGTGCAAGCTCACAAGcacatagagagacacacagccacATATCAACgcccacacacatgcatgcacacacaaacacttggtAACTACTAAAAGGGGAGCATCGTAGGCATGTCAGTAAGAGCTGATGAACACCACGAACAATGATAAAGGCACAATCAAAAACACTAAGTCACATCAAATGTGTGCAAAAGTCTGGGTCGGTGGGtttgtataaaaaatatattgagTCAAATAAAGTACAACATATCTTTACATACTCTAATGGGGGATTTTGTGCATATAAAATGTACATTCTAGATCATGCAGTAGCACCATTGTTTCTTGAGGTTCAACTTCTTCTGAAGAACACCCTCTACTTCTGCCTTCCACAGTATTTGCTTTGGCATCCAGCAGCAACTCC
>TU2356475
GTGTATTTATTAACCATTTTATTTCGTTATTTTACTTAAGCAAATAAAATGCCGGGATTACCGGGAACAAGTCACATGTGCGTCATGAAAATGTAAAAGTGCAAAACCCCATCGTTCCTCCTTTTTTGCCATTTAAATAAGATTAATACTATCCCACTGCATGGAAGACACGGTGCGGCGTGCCCCGGATCCGAAAAGCCCTACGGGTAGGAGTGAGAGTCATGATAACCTAGGGCAATTACTACAACATATAGTCCACACAATCCCTAAAGATTCATCGTAGTGTAACTTCATAACAGAGTGAATCCATCTTTGGTCAGTAATGTCTAGTGAGTCTTATTCAACTGTAACTAACTCAAGTAAAGAGTGAAATGGGAGCTCACTCTCACAATTTACACAGACTAGGGGaagcctacacacagacacatattaAAAAAGCccttacacatacagtataacaattCTCATCAGTGATTAAATGCATTacccaaatatatatattttttttaacaaacatGTTTTGCCTTATTCAAGATTACACAAATATGGTGATAGTCTACTTTCATGAGCGGAAACATTTGAAACTTGAATAATGAGCGACAACTTGCATAAATGAAACTATAACTGAATGTGAAACTAGAATGATTTCAGATATAGATATGCATAACATTCTGGCCCCTAATCTAGCACACTAGAAAAATTATACGTAATTAATAAAACAAAATGTTCAATTCATACATACATAATCTACAATACATGCCAGAGCAGTATCGAAAGAATTTCAGTTTTACTTTTACATTTTTGTAAAACTAAAAACATACAAATcacttaaaaaacaaaaaacactgtttcaaaGGTATTGAGTACAAACCAACACAATGTATGCTATGAATATCACTCACGATATCACCTACAAATCTTTTGAACACCTTTGGATTGATTGTCATCAGCTTTACCACATTCAGAGCAACACCTGCTCATCATACTTCACAAGTTTGTCAGAAATCAAGGTAAGAAGGCTACTTACACCATGGCCCTTAAAATATAGTCAAAGTTGAAGATGGCAGATGGACTGTGAAACctgtgcccacacacacacatgctatgcCACTGCTATTTCATCCAGGGATATAAATAGCAGCAGAGATGATAGAAAGCCAGAGGAGGCAGTTCTGAAGATACATGGCCAAAGTTTATCAGCACTTTACTAACCACACCCCTTGAAGCTCAACCCTTGGTTTGACATGTCAGTATGCGAAGAGCTCCAACTTTGGTACACACAGACACTAAGCACATGGAGAGGGATGTACAGTTACAGGAATGGTGCGGGTTTTGACTTGGAGCACTTCTCTGCATTCAAAGCATGCTTAATGGCTCTAGTTGGATAATCTTTCATATTCTCCTATATACCCAAACATCTCTGGCAGCATGTGCAAGCTCACAAGcacatagagagacacacagccacATATCAACgcccacacacatgcatgcacacacaaacacttggtAACTACTAAAAGGGGAGCATCGTAGGCATGTCAGTAAGAGCTGATGAACACCACGAACAATGATAAAGGCACAATCAAAAACACTAAGTCACATCAAATGTGTGCAAAAGTCTGGGTCGGTGGGtttgtataaaaaatatattgagTCAAATAAAGTACAACATATCTTTACATACTCTAATGGGGGATTTTGTGCATATAAAATGTACATTCTAGATCATGCAGTAGCACCATTGTTTCTTGAGGTTCAACTTCTTCTGAAGAACACCCTCTACTTCTGCCTTCCACAGTATTTGCTTTGGCATCCAGCAGCAACTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2356476 False 1191 lncRNA 0.39 2 19709888 19728046
TU2356475 True 1830 lncRNA 0.38 2 19726195 19728046
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507707 NA coding upstream 118606 19589780 ~ 19591282 (+)
LOC110507705 LOC106581049 coding upstream 138746 19541813 ~ 19571142 (+)
LOC110507704 LOC106581049 coding upstream 172754 19522166 ~ 19537134 (+)
LOC110507703 LOC106581047 coding upstream 207353 19440020 ~ 19502535 (+)
LOC110507701 LOC106581046 coding upstream 270221 19412671 ~ 19439667 (+)
LOC110507712 LOC106581053 coding downstream 224175 19952221 ~ 19960896 (+)
LOC110507714 LOC106581054 coding downstream 252961 19981007 ~ 19989638 (+)
LOC118944794 NA coding downstream 253806 19981852 ~ 19981993 (+)
LOC118944792 NA coding downstream 258259 19986305 ~ 19986439 (+)
LOC118944793 NA coding downstream 258892 19986938 ~ 19987073 (+)
G2060455 NA non-coding upstream 63079 19642856 ~ 19646809 (+)
G2060422 LOC107663739 non-coding upstream 124784 19584624 ~ 19585104 (+)
G2060417 NA non-coding upstream 142421 19567174 ~ 19567467 (+)
G2060403 NA non-coding upstream 179927 19529572 ~ 19529961 (+)
G2060537 NA non-coding downstream 43427 19771473 ~ 19771863 (+)
G2060539 NA non-coding downstream 47138 19775184 ~ 19780792 (+)
G2060545 NA non-coding downstream 59244 19787290 ~ 19787694 (+)
G2060585 NA non-coding downstream 122808 19850854 ~ 19851080 (+)
G2060591 NA non-coding downstream 130662 19858708 ~ 19858990 (+)
G2059777 LOC106581039 other upstream 514704 19193457 ~ 19195184 (+)
G2059714 NA other upstream 617616 19091947 ~ 19092272 (+)
G2059435 NA other upstream 1115046 18571099 ~ 18594842 (+)
G2057945 NA other upstream 1834056 17873801 ~ 17875832 (+)
G2057804 NA other upstream 2123964 17583970 ~ 17585924 (+)
LOC110507725 LOC106581066 other downstream 330197 20058224 ~ 20059968 (+)
G2061226 NA other downstream 577336 20305382 ~ 20306608 (+)
LOC110507744 p4ha3 other downstream 976883 20697519 ~ 20708634 (+)
G2062402 NA other downstream 1417165 21145211 ~ 21146366 (+)
G2062531 NA other downstream 1552114 21280160 ~ 21281860 (+)

Expression

G2060507 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G2060507 Expression in each Bioproject

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G2060507 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network