G2069879 (LOC106581256)


Basic Information

Item Value
gene id G2069879
gene name LOC106581256
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 27642656 ~ 27665300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2366801
GTAATGGTTGAGAGTTCTCACTTTGGCATTTACGGAGAGAACCAAGTCCTGTTGAGTTGACCACTTGCAGTATTGCCTCACTCTTACTGGTTTCAGGTTGCTCTGGTGTTTTCTCTCCTACAGAGTCAGTTGAATCACATCCATCAGATAAAGAAGATGAACTACGTTCTGATATAGGGGATTCACTCCTACATGGGGAAGGCAAGCTCAGGATTGAAACAGGCAGATCACTGGAGTCAGTATGCTCCAGAAGCACAGCACTGGAGTCAGCTTTTTCCATAAGTTCTTCCCCTTGGACTGGAGCTCCACCCATTCTGAGGAACAATGTCTCCAGCTTTGCCTGAAGTCTCTCGCAGAGTCTACGAGCTGCATGGAAGGGTTTCCGCTTTGTCGTACAGTGTCCCACTTGGGTATCTCTCTGGGTGCTTGTTGGCTGATCTAATTCAGCATACTGCACAATGTCCTTGACATCTTCAACAAAGTTATCAATTATTTTTGATGCCTCAGATTCTACTTTGGTCTGTATGAGCTCAGTGGCCGCAGAATCAAGGATCCTGTCAGATGGGCTAGATGCATTCATCAAGCTTGGAGTGGTACTAAACGAATGAGAAGGTTgaaccataccagagatatcgctcattaaccttctcacaagaatttcactcacagcctttgaggctttggtcttgaacttcacactaaacagagtgccaagattttgcatcattgctttgcaagATGTACATATTATGTTCAGCTCCTCTGGAACAGGAGAGTCTTCAACATCCAGGTGCTCCACTACAAGGTCACTGCCAGATGCCAACATTTTAACTTTCACAGCCACTTCTCGAAAAACCTTAGCCAATTCCGGATCTTCTTTTTCCAATTCACCCACCATCTCTGCGATAACAGTCATCACTTCTTCTGTTGCAGGTGGAATGCATGACTCTAATACAGAGGTAGAGCTCTGGTCCTCTGGGGTGGTGTgatcatcaaaacatttctggaccatgttgaccattTGTTCAGCGGCCTGGGTACCAGAAGAAATAGGGGAGGACCGCCCTGAAATGGCTCTGCTGATGGTCGCAGAGAGGGCAGAGTTAAGCTGTTCGACCACCACCTTGATAAGACCAACAGTCAGCTCAGGTGGGCAAGAGGACAGGATATTATGATCAgacagttgctcctggacacttttgatgattctgtcctctgtcattcccaggaggactttcactgaggtctgggaactttaaaaCGAACAAGCAAAGCATGATAATTCCTGTCTTAACTTGGCAAATCGGTCAAGCGTTGTAATTTTAGTATTCTAAATATCTACATGTCCTTTTGATCGCTTTACATGCTCATTCATTTGAATATGCTCAAAGGCTGATACATTACATTTTGTACTACATCAGATAGAGTAAATTGCATTGGCTAACACTGGGATAGATGATCTCGGTGAAATCCATACATGAAAACCTTGAGGGGAACATACCTCTTAGAAGAGGGTGTTAGGGACCTGAGATGTTGAGCCCCTGTGCCGCCCTTATACATTTTCTTCGCCAGATATCtaacttcctggatgagctccagTCTTTCCTGATCAAAGGCAGCAAAGGCTCTTGCACTGCCACCCCtcttgggtgagtcagtgtcgTCGTCAGCAAAGTCCTTTACCCCAAGTACGCGGGCCAGGGCtggcagcaggatctgcagggtggtctgtgcgatgaaggttacaattgtcttgcacaatttggcaagctg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106581256

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2366801 True 1773 lncRNA 0.46 2 27642656 27665300

Neighbor

gene id symbol gene type direction distance location
LOC110507889 LOC106581258 coding downstream 108420 27517351 ~ 27534236 (-)
LOC110507887 LOC106581252 coding downstream 142605 27448217 ~ 27500051 (-)
LOC110507886 LOC106581251 coding downstream 195112 27428483 ~ 27447544 (-)
LOC110507885 LOC106581250 coding downstream 238276 27333102 ~ 27404380 (-)
LOC100135795 LOC100135795 coding downstream 312191 27318991 ~ 27330465 (-)
LOC118944649 LOC106581256 coding upstream 37354 27702654 ~ 27738528 (-)
LOC118944710 NA coding upstream 85485 27750785 ~ 27751274 (-)
LOC118944701 LOC106581256 coding upstream 94402 27759702 ~ 27763326 (-)
LOC118944708 LOC106581256 coding upstream 108051 27773351 ~ 27774663 (-)
LOC118944699 LOC106581256 coding upstream 113504 27778804 ~ 27780466 (-)
G2069731 NA non-coding downstream 247662 27394424 ~ 27394994 (-)
G2069679 NA non-coding downstream 309625 27287692 ~ 27333031 (-)
G2069672 NA non-coding downstream 359540 27282799 ~ 27283116 (-)
G2069894 NA non-coding upstream 4822 27670122 ~ 27670402 (-)
G2069910 NA non-coding upstream 5543 27670843 ~ 27671082 (-)
G2069913 NA non-coding upstream 9371 27674671 ~ 27674917 (-)
G2069916 NA non-coding upstream 18530 27683830 ~ 27686291 (-)
G2069917 NA non-coding upstream 21350 27686650 ~ 27686929 (-)
G2069842 NA other downstream 102047 27540000 ~ 27540609 (-)
G2068676 NA other downstream 1317177 26325130 ~ 26325479 (-)
LOC118944698 LOC106581256 other upstream 203924 27866010 ~ 27871529 (-)
LOC118944653 LOC106581256 other upstream 207409 27872709 ~ 27889358 (-)
G2070530 NA other upstream 505538 28170838 ~ 28172542 (-)
G2070744 NA other upstream 858646 28523946 ~ 28524550 (-)
G2071247 LOC106581281 other upstream 1276054 28941354 ~ 28942728 (-)

Expression


Co-expression Network