XLOC_000396 (htr1fb)


Basic Information

Item Value
gene id XLOC_000396
gene name htr1fb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33634186 ~ 33635304 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000677
ATGGATCCCATTAACTGCACGTCTGTGGATCTCTCTGATGTTCTGGCCAGCAAGATGAGCCCCAGTAAGATCCTCCTTTCTCTGACTCTCTCCTTCCTGGCTGTGGCGACCACTGCCATCAACTCCCTGGTCATCACCGCCATCCTGATCACCCGCAAGCTCCACCAACCCGCCAACTACCTCATTTGCTCTCTGGCTGTGACAGACCTCCTGGTCGCTGTTCTGGTGATGCCCGTCAGCATTGTGTACATTGCAGAAGAGACTTGGGTCCTCGGCCCCATTGTTTGCCACCTGTGGTTAGGTGTCGATGTTACATGCTGCACCTGCTCAATTTTACACCTCGCCGCCATTGCGCTGGATCGATACCGTGCCATCACTGATGCTGTGGCGTATTCGCAAAAACGCACATATAAAAGAGTGATTGTAACCATTTTGTCTCTGTGGACACTTTCCATTCTGGTGTCCCTTCCACCTTTAGTATGGAGGAAATTCCCTAAAGTAGAATTTAAGGACGGGAAGAGGGAACCCATGGACTGTTTGATTGAACACGACCATGTGGCTTTTACCGTCTACTCAACTTTTGGAGCATTTTACATTCCTTTGGCACTCATTTTGGTTCTTTACTACAAGATCTACAAGGCAGCGGAGATGCTTCGTAACCGTAGAGGAAGCAGCCGGTTAGTCAAACAGACCGTCAGCAGTGTGATGCTTCCGGGAATGAGCTCTGATAAAGACATCGCTTTAAGTCCTGACTCATTCTGCCCAATCGAGAAGTCTTTTTCTGATCCTTCGACAGATGGGGAAAGAGTGCGCATTACTTCCTCATCAGGTAATCTCATCAGAGTCCGGAGGAACCCAGGAGCCAGGGAGAGACGAGCAGCTTTGACATTAGGACTAATCCTGGGAGCTTTTGTGGTGTGTTGGTTACCGTTCTTCCTGAAGGAGGTGATTGTGAATATTTGTCCGACCTGCACCACCTCTGCGGTGCTTGCAGATTTTCTCACCTGGCTTGGGTATCTCAATTCTCTTATAAACCCACTTATATACACCATCTTTAATGAGGACTTTAAGAAAGCCTTTAAAAAACTTCTGCCACTCTGTTGCAGCACTGTCTTGTGA

Function

symbol description
htr1fb Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR1F (5-hydroxytryptamine receptor 1F).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-140 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR1F (5-hydroxytryptamine receptor 1F).

Ensembl:

ensembl_id ENSDARG00000053580

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000677 True 1119 mRNA 0.48 1 33634186 33635304

Neighbor

gene id symbol gene type direction distance location
XLOC_000395 chmp2bb coding upstream 64941 33558555 ~ 33569245 (+)
XLOC_000394 NA coding upstream 115363 33517802 ~ 33518823 (+)
XLOC_000393 dhrsx coding upstream 146811 33383644 ~ 33487375 (+)
XLOC_000392 mxra5a coding upstream 299454 33322174 ~ 33334732 (+)
XLOC_000391 prkx coding upstream 350497 33217911 ~ 33283689 (+)
XLOC_000397 znf654 coding downstream 12378 33647682 ~ 33663705 (+)
XLOC_000398 arl13b coding downstream 32932 33668236 ~ 33694795 (+)
XLOC_000399 nsun3 coding downstream 61866 33697170 ~ 33722780 (+)
XLOC_000400 CU915566.1 coding downstream 99714 33735018 ~ 33735134 (+)
XLOC_000401 CT573012.1 coding downstream 331853 33967157 ~ 33967273 (+)
XLOC_000390 BX322647.1 non-coding upstream 417468 33215241 ~ 33216718 (+)
XLOC_000388 CU915272.1 non-coding upstream 927959 32706109 ~ 32706227 (+)
XLOC_000386 CU462859.1 non-coding upstream 1120082 32513989 ~ 32514104 (+)
XLOC_000383 BX901898.1 non-coding upstream 1616071 32017437 ~ 32018115 (+)
XLOC_000403 dre-mir-734 non-coding downstream 487576 34122880 ~ 34122972 (+)
XLOC_000407 CR848003.1 non-coding downstream 764936 34400240 ~ 34400354 (+)
XLOC_000408 NA non-coding downstream 815355 34450659 ~ 34454447 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_03253972_03255119 HTR1FB, HTR1F coding CI01000049 null 3253972 ~ 3255140 (+)