G2071250


Basic Information

Item Value
gene id G2071250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 28940764 ~ 28944529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2368350
AGCTCAGTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCCGGATCAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacagagctcaGTTCAAGTGTAGAAACCATCATGAAATATAATTCAGGGTATTATTGA
>TU2368351
AGCTCAGTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCCGGATCAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacagagctcaGTTCAAGTGTAGAAACCATCATGAAATATAATTCAGGGTATTATTGA
>TU2368352
AGCTCAGTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCCGGATCAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacacacagagctcagTTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaaggacacacacacacacacacacacacacacacacacacacacacacagcgcagtTCAAGTGTAGAAACCTTCATGAAATATGTTTTCACATATACTTCAGGAACAATTGATTTACATCATGGCTcagaaagaaaacacacacacacacacagcgcaagctcaGTTCAAGTGTAGAAACCATCATGAAATATAATTCAGGGTATTATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2368350 False 589 lncRNA 0.40 2 28940764 28944529
TU2368351 False 575 lncRNA 0.39 2 28940764 28944529
TU2368352 True 697 lncRNA 0.39 2 28940764 28944529

Neighbor

gene id symbol gene type direction distance location
LOC110507148 med17 coding downstream 5105 28933760 ~ 28935659 (-)
LOC110507264 NA coding downstream 34501 28903769 ~ 28906263 (-)
LOC110507911 LOC106581244 coding downstream 43426 28863097 ~ 28897338 (-)
LOC110507910 stch coding downstream 78194 28856049 ~ 28862570 (-)
hsp47 hsp47 coding downstream 192759 28743292 ~ 28748005 (-)
LOC110507149 LOC106581284 coding upstream 26805 28971334 ~ 29004207 (-)
LOC110507915 LOC106581294 coding upstream 163266 29107795 ~ 29166562 (-)
LOC110507150 LOC106581286 coding upstream 236095 29180624 ~ 29186077 (-)
LOC110507151 LOC106581293 coding upstream 273336 29217865 ~ 29251545 (-)
LOC110507265 NA coding upstream 333466 29277995 ~ 29285413 (-)
G2071197 NA non-coding downstream 94603 28845326 ~ 28846161 (-)
G2071200 NA non-coding downstream 98818 28837035 ~ 28841946 (-)
G2071123 NA non-coding downstream 199511 28737270 ~ 28741253 (-)
G2071135 LOC105014307 non-coding downstream 203639 28736564 ~ 28737125 (-)
G2071125 NA non-coding downstream 223080 28717478 ~ 28717684 (-)
G2071298 NA non-coding upstream 97006 29041535 ~ 29041746 (-)
G2071309 NA non-coding upstream 107961 29052490 ~ 29052698 (-)
G2071316 NA non-coding upstream 113761 29058290 ~ 29058667 (-)
G2071487 NA non-coding upstream 195694 29140223 ~ 29142038 (-)
G2071506 NA non-coding upstream 232106 29176635 ~ 29280698 (-)
G2070744 NA other downstream 416214 28523946 ~ 28524550 (-)
G2070530 NA other downstream 768222 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 1051406 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 other downstream 1070669 27866010 ~ 27871529 (-)
G2069842 NA other downstream 1400155 27540000 ~ 27540609 (-)
zgc:165508 LOC106613118 other upstream 687383 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 885573 29822517 ~ 29833885 (-)
G2072732 NA other upstream 1451246 30395775 ~ 30396680 (-)
G2074300 NA other upstream 3083099 32027628 ~ 32027967 (-)
G2076236 NA other upstream 3934260 32878789 ~ 32880888 (-)

Expression


Co-expression Network