G2071247 (LOC106581281)


Basic Information

Item Value
gene id G2071247
gene name LOC106581281
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 28941354 ~ 28942728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2368344
TGATCAGGCTGGCATTGGCTGGCGTCTCCACCTCCTGGATGGCACTGAGCTCGTGCTGCTCCATGACGGCCAGCCTGGCACGGGCCACCGGGGGTTTGGCTGCCCGGGGGTGGGGGAGTGGGTGAGGGGCGGGTCTGTCTGAGTGTGAACTCTGGACGTAGAGTGTGTCATCTTGGCTCTGACTGGTTTCTACCGATGTTGAGGTTTGCCCATTGGACTCCTCGATGGCCCGAAGCAGAGCTGCCATCAGACGGAGACGCTCTGACCCCAGGACttctgaccccaaaccatcagtGGTCTCTGGACCAGGCTGGTGGAGCCACACAGAGatcgagacagacacagacagatatggCTGTTCCCTCTGCTGCATGAAGAGCACCTCCCTCTGGGCCTCCACCCGCCACTGGGCCTCCTGTAGctcctgcctctgcctctccacctcctccccaaaCCTGGCCGGGGCCCGCAGGACAGACCCAGGATTTACCGGGGCCCCCCCTTCTGAAAGGGTTGGGTTGATGGGTGGGATGGGGTCAGTTCTTGATGGGAGTGGGATGTGTGGAGTAGGGTGGAGGGAAACAGGATGTGGTCTGTAGGACTGGGGGTCTAACGAGGTAGAGGGTAGAGGTAGCTTCTCAGGGACATCCTCTGTGACCCTACTAAACACATTTTCTGCCAGCCATACACCTGCTCTTTGGTCCCTTAGGCTTTCAGAGGTGGGTTCTAGCTGCACTGGTGAGGTTCTGGAGTTAATATGCGAGCCAACTGTAGTGCCAGGGAGGAAGAGAGTTTGCGCCAAGATGGAGGGCTCCTGTGTGGGGAGGTCCAAAGGGGTGTGAGCTCTAGAGTGGGGACtaagtgctacagggagacaggggagtAGGGCAGAACCAGAGGGGAGTTCTAGGGGCACTGCCGGGGGATTGATTCCTCCTTTAAAGTGTGGTAGAAGACGGGCTGTGGTACCAGGAGGGAAACATGTTGAGCTAGTTTGACCAGAGTAGCGGTTTCTTAGCGTGCGTTGGTATCCTTCCAGACGCCGGCGAGCCTCCTCCACGGACTGCTTATGAAGCCTAAGAGATTGAAACATTGAAAATATTTGTTTTAGATAAATG
>TU2368346
TGATCAGGCTGGCATTGGCTGGCGTCTCCACCTCCTGGATGGCACTGAGCTCGTGCTGCTCCATGACGGCCAGCCTGGCACGGGCCACCGGGGGTTTGGCTGCCCGGGGGTGGGGGAGTGGGTGAGGGGCGGGTCTGTCTGAGTGTGAACTCTGGACGTAGAGTGTGTCATCTTGGCTCTGACTGGTTTCTACCGATGTTGAGGTTTGCCCATTGGACTCCTCGATGGCCCGAAGCAGAGCTGCCATCAGACGGAGACGCTCTGACCCCAGGACttctgaccccaaaccatcagtGGTCTCTGGACCAGGTGTGTGTCATCAGCAGTGAGCAGTGCCTgtaacacctccctctgtctcctcctctgctccctctgttcctcctccAGTTCCCTCTGCTGCATGAAGAGCACCTCCCTCTGGGCCTCCACCCGCCACTGGGCCTCCTGTAGctcctgcctctgcctctccacctcctccccaaaCCTGGCCGGGGCCCGCAGGACAGACCCAGGATTTACCGGGGCCCCCCCTTCTGAAAGGGTTGGGTTGATGGGTGGGATGGGGTCAGTTCTTGATGGGAGTGGGATGTGTGGAGTAGGGTGGAGGGAAACAGGATGTGGTCTGTAGGACTGGGGGTCTAACGAGGTAGAGGGTAGAGGTAGCTTCTCAGGGACATCCTCTGTGACCCTACTAAACACATTTTCTGCCAGCCATACACCTGCTCTTTGGTCCCTTAGGCTTTCAGAGGTGGGTTCTAGCTGCACTGGTGAGGTTCTGGAGTTAATATGCGAGCCAACTGTAGTGCCAGGGAGGAAGAGAGTTTGCGCCAAGATGGAGGGCTCCTGTGTGGGGAGGTCCAAAGGGGTGTGAGCTCTAGAGTGGGGACtaagtgctacagggagacaggggagtAGGGCAGAACCAGAGGGGAGTTCTAGGGGCACTGCCGGGGGATTGATTCCTCCTTTAAAGTGTGGTAGAAGACGGGCTGTGGTACCAGGAGGGAAACATGTTGAGCTAGTTTGACCAGAGTAGCGGTTTCTTAGCGTGCGTTGGTATCCTTCCAGACGCCGGCGAGCCTCCTCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2368344 False 1118 TUCP 0.57 2 28941354 28942728
TU2368346 True 1088 lncRNA 0.59 2 28941413 28942728

Neighbor

gene id symbol gene type direction distance location
LOC110507148 med17 coding downstream 5754 28933760 ~ 28935659 (-)
LOC110507264 NA coding downstream 35150 28903769 ~ 28906263 (-)
LOC110507911 LOC106581244 coding downstream 44075 28863097 ~ 28897338 (-)
LOC110507910 stch coding downstream 78843 28856049 ~ 28862570 (-)
hsp47 hsp47 coding downstream 193408 28743292 ~ 28748005 (-)
LOC110507149 LOC106581284 coding upstream 28606 28971334 ~ 29004207 (-)
LOC110507915 LOC106581294 coding upstream 165067 29107795 ~ 29166562 (-)
LOC110507150 LOC106581286 coding upstream 237896 29180624 ~ 29186077 (-)
LOC110507151 LOC106581293 coding upstream 275137 29217865 ~ 29251545 (-)
LOC110507265 NA coding upstream 335267 29277995 ~ 29285413 (-)
G2071197 NA non-coding downstream 95252 28845326 ~ 28846161 (-)
G2071200 NA non-coding downstream 99467 28837035 ~ 28841946 (-)
G2071123 NA non-coding downstream 200160 28737270 ~ 28741253 (-)
G2071135 LOC105014307 non-coding downstream 204288 28736564 ~ 28737125 (-)
G2071125 NA non-coding downstream 223729 28717478 ~ 28717684 (-)
G2071298 NA non-coding upstream 98807 29041535 ~ 29041746 (-)
G2071309 NA non-coding upstream 109762 29052490 ~ 29052698 (-)
G2071316 NA non-coding upstream 115562 29058290 ~ 29058667 (-)
G2071487 NA non-coding upstream 197495 29140223 ~ 29142038 (-)
G2071506 NA non-coding upstream 233907 29176635 ~ 29280698 (-)
G2070744 NA other downstream 416863 28523946 ~ 28524550 (-)
G2070530 NA other downstream 768871 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 1052055 27872709 ~ 27889358 (-)
LOC118944698 LOC106581256 other downstream 1071318 27866010 ~ 27871529 (-)
G2069842 NA other downstream 1400804 27540000 ~ 27540609 (-)
zgc:165508 LOC106613118 other upstream 689184 29626155 ~ 29651489 (-)
G2072288 LOC100196662 other upstream 887374 29822517 ~ 29833885 (-)
G2072732 NA other upstream 1453047 30395775 ~ 30396680 (-)
G2074300 NA other upstream 3084900 32027628 ~ 32027967 (-)
G2076236 NA other upstream 3936061 32878789 ~ 32880888 (-)

Expression


Co-expression Network