G2072288 (LOC100196662)


Basic Information

Item Value
gene id G2072288
gene name LOC100196662
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 29822517 ~ 29833885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2369519
CTCAAACAGAGTTTAATGCAGATGATTGACATATCAAAACATGGGTTTGAGTGGCTAAATGAATTCAGTGACTTGGAGTGTAACTTTATAATCTGAAACTGAACATGTAAAACCACCAATAACTTTAATTCAAACTGAAATGTACCTCATATAATATACACGTTTGACATTCAGggtcacataaaaaaaaaaaggtagcaAGTACTCTAGAAAGTATACAAAGGATAATTAAAACACTATGGAAATGTCTCATTGGCAGAACACTATATTATGGATCATAGAaaaagtcaaatcaaatgcaAACATTTAAAACAAATAGCATCATAATATGTCCATATTGTACACAAATCTCCAGATGGCAAAAATACAAgtctgagtgtgtttgtgtgtgtatgggttgtctcttat
>TU2369518
GGTTGTGTTTGGGTCTTACTTAGGCAGCAGCAGGCGGACCTTCCTCTGGTGCAACAGCTTGGTCCAGCTCTGTATCGTGGCTGTGCTGATGTGAGCAATGACATCATAGGGACTTTGTATGCATTGCCGTCTCCCGCATTGAAGGTTCTTATCTTGGTGTTCTCCAGCTGAAAGCGGGACTTCCACAGTCCTTTAAAGTAGATGGCGTTGACGGCCACCAGGCGGGTCAGAGCGCCGTCCAACATGTCTGCCTTGACCAGAGTGGGGATGTGGCCTTTGGTCTGGTTGTTGACCCAGTCATTGATGGTGGCTGCAGCCACCTGGGTGTCAGTGAAGTCCAAGGTCCGACTCTCACACTGGAAGTTGGCCCTGCTGGAAGACATGAAGGCCTCCTCCATAGGGAAGCCCTGCTGGGAGAACATAGCGTTGGCGATAGTTACGATGTCCTGGTTGGACTTGGCTGTCAGCGTCTTGTGGAGCTTCCTCAACATCTTATAA

Function

NR:

description
glia-derived nexin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2369519 False 408 lncRNA 0.32 2 29822517 29833885
TU2369518 True 498 TUCP 0.54 3 29830102 29831709

Neighbor

gene id symbol gene type direction distance location
LOC110507921 psmd2 coding downstream 44871 29756570 ~ 29777646 (-)
LOC110507923 NA coding downstream 66430 29683759 ~ 29756087 (-)
alp3 LOC106580686 coding downstream 150039 29658317 ~ 29672478 (-)
zgc:165508 LOC106613118 coding downstream 171028 29626155 ~ 29651489 (-)
LOC110507265 NA coding downstream 537104 29277995 ~ 29285413 (-)
LOC110507919 LOC106580690 coding upstream 20572 29854457 ~ 29860929 (-)
LOC110507916 LOC106591944 coding upstream 46769 29880654 ~ 29884496 (-)
LOC110507932 kcne4 coding upstream 97742 29931627 ~ 29932989 (-)
LOC110507928 acsl3 coding upstream 103018 29936903 ~ 29972053 (-)
LOC110507931 LOC106581313 coding upstream 156275 29990160 ~ 29994173 (-)
G2072267 NA non-coding downstream 116008 29705619 ~ 29706509 (-)
G2071993 NA non-coding downstream 156764 29664575 ~ 29665753 (-)
G2071983 NA non-coding downstream 165083 29657111 ~ 29657434 (-)
G2071963 NA non-coding downstream 197172 29625136 ~ 29625345 (-)
G2072292 NA non-coding upstream 3477 29837362 ~ 29837950 (-)
G2072294 NA non-coding upstream 4372 29838257 ~ 29838479 (-)
G2072295 NA non-coding upstream 5266 29839151 ~ 29839519 (-)
G2072296 NA non-coding upstream 6027 29839912 ~ 29840192 (-)
G2072298 NA non-coding upstream 7609 29841494 ~ 29841753 (-)
G2071247 LOC106581281 other downstream 879789 28941354 ~ 28942728 (-)
G2070744 NA other downstream 1297967 28523946 ~ 28524550 (-)
G2070530 NA other downstream 1649975 28170838 ~ 28172542 (-)
LOC118944653 LOC106581256 other downstream 1933159 27872709 ~ 27889358 (-)
G2072732 NA other upstream 561890 30395775 ~ 30396680 (-)
G2074300 NA other upstream 2193743 32027628 ~ 32027967 (-)
G2076236 NA other upstream 3044904 32878789 ~ 32880888 (-)
G2077617 NA other upstream 5282497 35116382 ~ 35154043 (-)
G2077934 NA other upstream 5600989 35434874 ~ 35435212 (-)

Expression


Co-expression Network