G2077636 (LOC106581395)


Basic Information

Item Value
gene id G2077636
gene name LOC106581395
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35160746 ~ 35164435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2375434
TCTTAAAGGCAATGCAGAAAGCATATAGGCAACATTATCCTTTTCTCATCTCTTAAAATAGACAGAACCTGCAGAGATATTCAACTCTTTCCTTGGATGACTCAGCTAATATAGAACATTCCACCATAGTACTAAACCACAAACTCACAATCAAAATAGCACCATTAAAAAAGACAAAAGGTTTGGTAAAATGAAAGTAAAATCTCTGTAAAGCCTTACATGACATTGGTTTGAGTCACatacagtagtatactgtagagcATTCTGTACTTTGAGTTTACAGCTACTCTACATTATGTCCCCTTTCTGTGCAGTACATGGACGTTAGTACTGAGCTACACAAAACAACAGTTTCTCCCAGCACACAACCACTCACTTGAAACAAACACACATTGTagacaccagtggaggctgctgaggggaggactgtTCACAATAACATctggaacggagtgaatggaatggcatcaaacacatggaaaccatggaaaccacgtgATTGGTGTATTTGAAACCAtgccgctccagccattaccataagCCTGTCctacccaattaaggtgccaccaacctcctgtggtagacACAGATTATATGTGTTCAATTAACATCTCCTTTGAATTGAAATAATCCATATTTTAACACAACAAAGTCCACAAGCATTACAGAATGATTGGCAGGGAGATGTTTTAAATGTGATAGGTAGCGGCTCTGAGTGGCAGTTTGAATCTTGATCCCGCCTCTACAGGAAATAAAACTGGATAACATCCTTTTGCCAACAACCTGGAGTAGGATGAAGACGCCCTgttgatctaaggtcagtttgaTGGTTGTACTGTCTGATTGGTTGAGCTATTCAGCTGTTGTGTATCAAGCTGAACAGTAACAAGCTATTGGAGCGgtctgagacagacaggagaggtggACCATGGAGGTGACTGCTCATAGAGGCTCATACCTGGCCTGTCTACACTGAGATAAAGACCACACTGCTCCCCACTTCTTTGACCTTTCTTCCAGGCACTTCTCTCGTAGATATCCCTTAATGCTCATCACACACGCTGCTGTTACTGTTCATTACCTGTCACGTTATtcctatatgtacatacagtgggaagaaaaagtaagtgaaccctttagaatgacctggatttctgcacaacaatagacacagtCTGCTTGAactcataaacacacaaacaattatatgtgttcatgtctttattgaacacaccgtgtaaacattctcagtgcagggtgggaaaagtatatgaacccttggatttaataactgactgaccctcctttggcagcaataacctcaaccaaacgttttctgtagttgcggatcagacctgcacaacggtcaagaggaattttggaccattcctccttacaaaactgTTTTAtatcagcaatattcttgggatgtctggtgtgaaccgctctcgaggtcatgccacagtaTCTCAAATCGGGTTGtggtcaggactgactgggccactccagaaggtgtattttcttctgttgaagccattctgttgttgatttacttctgtgttttgggtcgttgtcctgttgcatcacctaacttctattgagcttcaattggtggacagatttgccttacattctcctgcaaaatgtcttgataaacttgggaatacatttttccatcaatgatagcaagctgcccaggccctgaggcagcaaagcagccccaaaccatgatgctccctccaccatactttacagttgggataaggttttgatgttggtgtgctgtgtttttcttctccacacatagtgttgtgtgttccttccaaacaagtcaactgtggtttcatctgtccacagaatattttgccagtagcactgtggaacatccaggtgatCTTTTGTGAACTTCAGATgtacagcaatgttttttttggacagcagtggcttcttccatggtgtcctcccatgaacaccattcttgtttactgttttacgtattgtagacCCATCAGAGACGTtagcatcttccagagatttctgtaagtcttagCTAACACTCCAGGATTCtccttaacctcattgagcattctgcgctgtactcttgcagtcatctttgcaggacggacactcctagggagagtagcaacagtgctgacaTTTCTCAATTtctagacaatttgtcttaccgtggactgacttttagagatacttttgtaaccgtttccagcttcatgcaaggcaacaattcttaatcttaggtcttctgagatctcttttgtttgaggcatggttcaaatcaggcaatgcttcttgtgaatagcaaactaaTGTTGTGAGTGTTGatggggcagggcagctctaaccaacatctccaatctcgtctcattgattcaactccaggttagctgactcctgactccaattagcttttggagaagtcattagtctagaggttcacatactttttccaacctacactgaatGTTTAACTGATCTATTCAATAAAGACAAGACAAATACAATCATTTgtatgttattagtttaagcagactgtttgtctattgatGTGACTTACtgtagatgaagatcagatcaaattttatgtctAATTTATGCAGagatccaggtaattccaaagggttcacatactttttcttgccactgtatgtacctcaattaccttgtacccctacacatcaaattggtactggtaccccatgtatattaCAAAGCTTTTCATTTCTAattatgtatctattattatcatcatcatcatcatcatcatctttcaACCATTTCTCTATTTCCTCTCTACATTATTGGGAACGGcccataagcatttcactgttagtccacacctgttgtttacgaagcatgagacaaaatgttatttgatgcaatcctatcctccctctctcaatGACCCTGGTCCTGTTGAAGCTGCATTCTCTCCACCTCTAGTCTCTCCCGCTCTATCTGCAGTCGTCCAGACTCAAACTTAAAGAACTGCAGCCTCTCCTTCTCTAACTGCAGTCGCTCCTTCTCCAGGCTCAGTCTCTCACCCTCCAGATCTATCATAGAAAGCCGGGGTTTATTCTCATTTCTCTCAttctgtccatccacagcagagGAAGAGGATGTGgtaggagtggaggaggagggagggcctTGCTGGGGGGGAGCAGAAGCCCGTTCTGATTGGTTCATGAGCAACAGCCTAAgtctctccttctccagctgcaatctctctttctccagttgcaatctctccctctccacctccgaCTGActcagtctctccttctccagtaggagtctctctctctccaccgctAGCCGCTCCGTTTCCACAGCCACACGCTGCTTCTCCAGTTCCACACGCTGCTTCTCCAAACCAACCAGAAGTCCCGTACTCTCGTGATTGGCCAGTCCTAACCCAGCAAAGCCCATTCCGCCCAGTGAGAGGTCCCGATTTATTGAGGTCGCCGTCCCCTGTGAGGCGCTGAGCATTCCAAACTCATCAATGTGTGAGAAGACTTCCGGGATACGTACATCGCGCTCTCCCATGTCGGGTAGGAGGGAGGGGAAACAATCTTCTTCATCATcggcatcatcatcatcctcctcctcctctacctcaccATCTCCG

Function

NR:

description
myb/SANT-like DNA-binding domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2375434 True 3649 lncRNA 0.44 2 35160746 35164435

Neighbor

gene id symbol gene type direction distance location
LOC110507205 LOC106581390 coding downstream 261338 34898581 ~ 34899408 (-)
LOC110507204 NA coding downstream 266063 34886462 ~ 34894683 (-)
LOC110507202 LOC106581387 coding downstream 291490 34866113 ~ 34869256 (-)
LOC110507200 LOC106581380 coding downstream 309004 34850844 ~ 34851742 (-)
LOC110507267 NA coding downstream 316209 34842114 ~ 34844537 (-)
LOC110507210 gria4 coding upstream 4797 35169232 ~ 35330617 (-)
LOC110507269 NA coding upstream 619058 35783493 ~ 35787697 (-)
LOC110507979 rab38 coding upstream 911708 36076143 ~ 36107044 (-)
LOC110507212 NA coding upstream 943281 36107716 ~ 36108445 (-)
LOC110507213 LOC106581415 coding upstream 968302 36129462 ~ 36264360 (-)
G2077635 LOC106581395 non-coding downstream 1485 35159019 ~ 35159261 (-)
G2077633 LOC106581395 non-coding downstream 2962 35157252 ~ 35157784 (-)
G2077624 NA non-coding downstream 24817 35135550 ~ 35135929 (-)
G2077621 NA non-coding downstream 39070 35120583 ~ 35121676 (-)
G2077573 NA non-coding downstream 118375 35040495 ~ 35042371 (-)
G2077819 NA non-coding upstream 39294 35203729 ~ 35207248 (-)
G2077877 NA non-coding upstream 159378 35323813 ~ 35324391 (-)
G2077892 NA non-coding upstream 186945 35351380 ~ 35353524 (-)
G2077917 NA non-coding upstream 235502 35399937 ~ 35400178 (-)
G2077617 NA other downstream 6703 35116382 ~ 35154043 (-)
G2076236 NA other downstream 2279858 32878789 ~ 32880888 (-)
G2074300 NA other downstream 3132779 32027628 ~ 32027967 (-)
G2072732 NA other downstream 4764066 30395775 ~ 30396680 (-)
G2072288 LOC100196662 other downstream 5329037 29822517 ~ 29833885 (-)
G2077934 NA other upstream 270439 35434874 ~ 35435212 (-)
G2077936 NA other upstream 271159 35435594 ~ 35436257 (-)
G2078119 NA other upstream 562421 35726856 ~ 35727482 (-)
G2078218 NA other upstream 662681 35827116 ~ 35827711 (-)
G2078260 NA other upstream 694467 35858902 ~ 35866253 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G257497 NA non-coding NW_019171629.1 APWO02001227.1 32359 ~ 37063 (+)