G2078647


Basic Information

Item Value
gene id G2078647
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36124286 ~ 36129306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376655
taggagtcaggcgtggagagcagagggtttactaggagtggtgggtaggaGTCAGgcgcagagagcagagggttcagTGATTTGAAAGATGTATTCTCTGCCACAAAACGGTCTCGCCAAATACAGGGCatataacactgaccaacccaaacacaggacaaacagtccggagaaaacAACGAGAACACATCCACAACTGACAGAGAACAAAATACTCCCGCACAAACCTAAGCaggcctaacaggcttaaatagacaAAAATCAAGAAACAGAAAAaggaacaggtgcaactaataagactaaactaacagaaaaggaaaaaggaacaggtgcaactaataagaccaAACTAACAGAAAAGGACAAAGGGATCGTTGGCGGCTAGTAGAccagcgacgacgaccgccgagcgccgcccgaaccaGCAGGGGAGACACCTTCCATGGGAGTCGTGACAACAAATCAAAGAATTTGAGAAAAAAATGACATTCCTAAATGACATCTTTTTGCTCCCATAGTCAAGACTAAGACGATAACCTTAATGATAGAGATTCTATGTTTGGGAAAATACAGTCCTTTCATTGATGAGATTCTATGTTCATTAGAGATGTTAATAAGATGATGAATGTTGCCTAGAATTATAGTGATGTTTATGTACGGAATGCTAACTTGCGATTATCCAGTTTATGTTGTTGAATCACATCGTGATGATTATGAAACAACCTTATCACCATATATTTGTGCTAGCTTTGTGATTTCAGGAGAAATGGTGATGAACTATGTAGAATTCCAATAGACAAAGGCTAGGCAGCTCAATAATTAATGTGTGTATATGGAATGCATGCGAGGGAATTGCTATCTGCAGTATTCCTAATTGGACAGCAAATTTTGGGAATGCAGCACTATGGTCTGTGCATTACCCATCGTTACCCATCGTTGTTCACTGACAGAGAGctaagatgagaggagagatgcacactgacactgtccacactcatggttttattcatacttaccagagccatgtatttagagaGGTTTCTGCATTAAgatgcatttacatgacacttcaacattctatggcagccatgttagctcccaaTTAACGTCACATGGGGAATATTTAAATATTGCTATGTAACTGTATGTCTAGAATTAGAACAATATTCAAAATTGTAAATGTTGGCCCAACATTCTAAATATATTGCTCTGATACCAAGCTCCTTCACTCAGTGCTAGAATCTCTATAGACAATGTTTACTGCTGAgacatttaagtgataatgccagagaagcctgtgtttggaggatatattggcacaggtgtCCGAGATGAAGTCGAGGGCCGGAAAACTGTCCCAATATCTCCTCCAAACACCGACTTTGAGGgtattatcacttttatacaacgggttaccaacatattcaaataatgattgacatatttgcattaaaaatgttattttgattaatttattcatactatttcatccttccacaagatgtGGTACCGACAGATATGTAGGGTTGCTATCCAAGCCGGCCATTCGTTGgttctattggttcggttgccagagacgggacccagtcgttggttctattggtttggttgccagagacgggacccagtcgttggttctattggttcggttgccagagacgggacccagtcgttggttctattggttcggttgccagagacgcgacccagttgttcagtctttttgttctaaatgttccattgctaTACTGGatggcaacattcttatcccttgctttctagctagccaacaacagctaacttacagtcacattAAACATCAAAAAGAATAACAACAGTATCTGCATTTGCATAatctgttttctagtgacatttatttggatacattcataacaatgagctaatgaagCGCGATTTCGCCTCGCatggaaaatgtgctctctcctcaggtcactgttgttcagaggagctagccaacaacacagctaacataatcacctcaaactgaagctggtcactgttgttcagaggagctagccaacaacacagctaacacaatcacttcacacTGAAGCTGgtcactgttgttcagaggagctagccaacaacacagctaacaccatcacttcaaactgaagctggaaagacttcAAACTAGTTGCACTTtgtttcgtttgacctttttccagttgacatttctttgtatatatccataaaaatgatgccagctgattcatgacttcgcctggctgagaaacgctgcctgcctgtctgtctcagcaAGGTTTaaacaaatctccgctgttgaaaactaaatgttagtctaaaatagATGCTTTTTAAAGTGGAGATccagtttataaattgcctggctgggctgatgagacagtggattgcacagtcagatggaacagagtaagtaggcattttaacgtcatagatttagccggtgataacttgtggaatagacaccagctggaatgcgcttttaaccaatcagcattcagtattagacccaccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376655 True 2521 lncRNA 0.41 2 36124286 36129306

Neighbor

gene id symbol gene type direction distance location
LOC110507212 NA coding downstream 15841 36107716 ~ 36108445 (-)
LOC110507979 rab38 coding downstream 17242 36076143 ~ 36107044 (-)
LOC110507269 NA coding downstream 336589 35783493 ~ 35787697 (-)
LOC110507210 gria4 coding downstream 793669 35169232 ~ 35330617 (-)
LOC110507205 LOC106581390 coding downstream 1224878 34898581 ~ 34899408 (-)
LOC110507213 LOC106581415 coding upstream 3431 36129462 ~ 36264360 (-)
LOC110508009 nox4 coding upstream 165744 36295050 ~ 36364517 (-)
nlrc3l LOC106581410 coding upstream 266706 36396012 ~ 36426037 (-)
LOC110508006 lamtor1 coding upstream 304690 36433996 ~ 36437937 (-)
hs020 hs020 coding upstream 312976 36442282 ~ 36446146 (-)
G2078644 NA non-coding downstream 4529 36119277 ~ 36119757 (-)
G2078642 NA non-coding downstream 10064 36113859 ~ 36114222 (-)
G2078640 NA non-coding downstream 17837 36106174 ~ 36106449 (-)
G2078632 NA non-coding downstream 49810 36073994 ~ 36074476 (-)
G2078631 NA non-coding downstream 50468 36073246 ~ 36073818 (-)
G2078651 NA non-coding upstream 6107 36135413 ~ 36136160 (-)
G2078653 NA non-coding upstream 10826 36140132 ~ 36140370 (-)
G2078660 NA non-coding upstream 31301 36160607 ~ 36160822 (-)
G2078677 NA non-coding upstream 67025 36196331 ~ 36196781 (-)
G2078637 NA other downstream 20145 36102700 ~ 36104141 (-)
G2078263 NA other downstream 247638 35873302 ~ 35876648 (-)
G2078260 NA other downstream 258033 35858902 ~ 35866253 (-)
G2078218 NA other downstream 296575 35827116 ~ 35827711 (-)
G2078119 NA other downstream 396804 35726856 ~ 35727482 (-)
G2078753 NA other upstream 253879 36383185 ~ 36389384 (-)
G2078826 NA other upstream 395694 36525000 ~ 36525640 (-)
G2079261 NA other upstream 665462 36794768 ~ 36861357 (-)
G2079301 NA other upstream 792956 36922262 ~ 36928132 (-)

Expression


Co-expression Network