XLOC_000397 (znf654)


Basic Information

Item Value
gene id XLOC_000397
gene name znf654
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33647682 ~ 33663705 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000678
AGACAAGCAGTATGGCGGAAGAAGAGAGTGAATTGGAGTTAGACAGGTTTAAGAAAGAACTGGAGACTTTGTTGAAGATTAGTGCAAGCGACGAACGCGGGCTCCAGAGTAAGACGTACTGTGAACGGTTTTGTGAGTTGGTAGTGGAGCATACTGGACGATGGCAAGTGCCTCTTCCCCAGCTCCAAGTGTTGCGGAGTGCCCTATGCTCTTTTGTCCAGGGTGTAGCATCATTCCCTCCTGAGTGTGAGCATGTTCGCTATACTCTGAGTAGTCTGGCCCTgaGTATATTTGAACTGCTGTTGTTCTTTGGAAAAGATGAATTCATCGAGCATCCTTTAAAAGACATTCTAGACTCATTCCAGgtctGCTATGCGAGCCTTGTGAGCCACCAGAATGTTTACCTTCTGCAGGTTAGACATATCATTAAAGATGGAGGACCTTGGGCAAGTCCTGTACTCGAGGCCATTCTTAAGGATTCAGAGTTACCACAAGAAGATGTGGACAAATATCTGAGCTCTGAAGCATCCATTTTCTTTGAGCTGCGTTTGCGTTACCTGGTGGCATGTGAAAGGCTTCCTGAGGCTTTGGCACTGACAAGGAGATGCATCCAGCATTCTGTCGTTGGAAAGTACCTCTATTACAAGCAAGCCTACCTCATCTGTCTTTGGAAAGCAGCTCTTCATCAGTGCTTGAACAAGGAGATGGCAGACATTGATGGCAAGGATGCTGTTGAGATACTCTGCATGATGGAGAATGAGGAGAAAGATGAGACTGTTTTGATGCTGAGTAAAAGCTTCCTATCCCAAAAGCTCCAGACAGGAGACATGTACTACCTTTGggaTTTGGTCTTCATATGGAGCAGACTCTACATGAGGCTGAACATCTCTAAGCAGGGCTTTCTAGAGGAATGCAAAGTAATGATTCTTTCAGCCACCAACATAAAAGCAATTTTCCCATTCATGAAGGTGGTTTTGACAGAGtttGGAAAAGATGGCCGGGAGTTTTGTGTGGAGCTTTGTGCCCGAGCCTTACAGACCGACCTTCAAAATGATCCAGCCACCAAGACACTGTTCTACAAAACTGTTGCATACTTGCTCCCTAATGACCTTGAGGTCTGTAGGGCTTGTGCACTGCTCATTTTCTTTCAAGAGAGAACTGTTGAATCATACAAGAATGTGTTCCTCTTGTATATCCACCCTGATCAACAGTACCATGTAGACACTGGTCTTGTGGGCAACAGTGTACGATTTGAGGTTCTCCAGATCCTTAAAAAAGACCTGTATTTTGACCCTGAGTTCTGGAGCATTCTCAACATTGAGACAAACTGTTTAAAGCTAATGAGTGATAAGGTTGGCAAAGCAGCTTTATGTGAAATCATGCAAAAGGACAAGTGGTTGCCAAGCTACTGTGTAAAGGGATGTTGTCAGTGTCATTCAAACGACACAGACAGGACTGTCAGTAAAGCAGAAAATCATACTAGTCATATTGACCAAGAAACAACATCAATGAAAATGTGGGTTAAATTTCCCTCAGAAGATGCATCCTCCAAAACTCCAAGCAAAAAACGGGGAAGAAAGCCAGGCACACGACttgtaaaaaattcagatgcCTGTCCAGTTCGACGTTCATTTAGGCAACTGGACTTGGAAAAGGATTATGAGAGGAAACTTAATAGCAGGCATCAGAGACGCTCTCGACAGACAGAGATGAACACACTGAAACGGAAGGGAAGAAAGCCACAATGGCTTTTGGACCAATTAGCTGGCCAATCAGAAAACAGTGAGCCACGACAAGTCAAGAAGCCAGGAAGGAAACCAAAGGAGTCACATATTTTGAGGGAGATTTTACTTGAGCCACCAGTCAGTGAAATCACAGTGGTATTTTCCTACCCTGATAATGAAGTTGACATCGCTCCTAATGTTCAggccacacaggtttctgcagaGACTCCTCACATGACAGAAAAAAGTACTGACAAAACCTCATCTCTAGAGAATTTAAAATGGCCTCACAGTGCTCTGTCTCTTCTCGAGTTACTGTCTGCAGAATCTCCTCCACGTAGCAAAAAAGACTTGAGGATGAAGGATGAGTTTGTTTTCCGGGAGCAGGGACCTTCTATGGTTCGAAAATTCCACACATATTCAAGACCTGTTGAATTAGAAAAAATATCATTCAACAGTTTACCCAGAGAGCAAGAAGCTAAGCTGAACCATAATGAATCCAAAGAAGAAAGTGTGGCTACAGAGCAACTGTGTGAACCTGCAGAGAGCCCTGAAGTTGTTGAACATGTTAAACAGTCTGTCGAAATTAAGTCTACACCAATCCCAGCTATAACAGCAGAAACAGCCCCTTCTGTTGAAGCCATTCGAGAGCCAGTTAAGGAATGCACAGAAGATCCAAAAGTTGGCGAGTTTTCAAGCCCTCAAGATACAGACATGCAATTTCCATTATATGGTCCTTACAGTCCTATTAGTCCTCCAGAAAGTACTAATGTTGACAATGAACCTGAATTGTCAACTCCCACCATATCTGACACTATTTCTGCAGAAGGGACAAGTCTCACTACAGCTGCCACAATATCTCTATCTGATAGTACACCAGAAAACATTACCAGTCTTCCCGAGGAGGCTCCTCCAGTTCTCACTGAAGTTGCAGTGCTCCCTGATGATACAGTGGCTAACACTTATGCTTCATCTGAAATTGTGCCTGAGAGTACAGACATGTCAGTGGTGCCACCAAGAACCAAGGAGATAACGGAAATGAATGCTGCTGTTGATGATCTTGTAGCCAACCGTATCCCCCAAAGTGACACAAGTTGCCAGCTTTCAGTCAACTGCAGCTATtgcaataaagaaataaaattccCACACATTCTACGTCATGCACTGTGGCATCATCGGATcgaaaaaaaatgcatgttttgtCACAAACGCTACGCTCATGGGCGCAGCCCATCAGTCCATTTTAAAGTCCACATTCAGCAGCTGAAACAGTCTAATggacttttaaataaaaacattcctAAGAAAGCAGCTGAGACCAGCTCACAGCGTGTTCAAAAGAGACGGGTAAAACGTGGCCGTCCGCCCATTCGGAATAAGCTTAGAAACATTAAAATGAGGTTAAACTGTACTTTGAACATCGCAGATATGCACAAGGATGGGCAAAACTCAGATCAAGTAAGACTACGGACAAGGTTAGTTAAAAATTCAGATCCTGGAAAGGCAACGAAAGAACCAAAGGAAAAGGCTAGTAAGATGAAGAAAAGGCATTTAAAAAGGGTATTAGTTAAGAGACCTCAGTCCAGAGATGAGAACAAAAagcttttcagaatgagactagAATGGAAAAGAACGAAGACTATACAAGCACCAACTCCGAAGGACAACCACTTGGAGAGCAAGAGCAACTCCGCTCCTAGGGTAAATGGAGTGatcagaaagaaaaggaaagataAGAGTGTATCTGAGACAAATCTCTCGAATGAAATTGCTCAGACATCAGTACCCCATGAAATCAGAGTAAAAACAGAGAATGTAGAATGCTCAGAAAGTCAAAAAGGCACAGAAATTCAAAGAGACAAAGAAAGTCAAAAGGACATTGTCAAATGTCAATCTGAGAATGCAGGTGTAATAAAAGACAAGATCAAATCAAAATCGAAAAGAACAATTGAAATGCTGAAAACTGTGCTGAAAAAGAAGATTGCGCCTGAGGAGCAAAAAGAGGATGGAGATGCTGTAAAAAGAAGGAAAATAAGCAGTCCAGAAGTCAGTTCTGAGAATCAGCAACCCAAAGACAGTAATACAGTACAGAAGGAAGTAAATGCAGTGGAGAACAAAAATGGCACTCAGAAAAAGTCAAAAGTGCCTTCCACACCATTCCAGGGAAAAAGAACCGGAGCATCCACACAAGTCAAATGTCCTGTGGAGATTTGCACATTTAGTGCAAAGTCAATACTTGTCCTTTCACATGTGCTCTCTCACCATCTCAGTGACAAGAAGGCGCTTGTGTTCTTTTATGACTTTGGAAAGGAAAAATGTCTTTACTGTTGCAGGAAGATATGTAACCCTCAGCATTTTTTTGATCATGTGATGAGTCACAGAGGCGAGTTAAAGTTCCCATGCTACCATTATGGCTGTAAGCAGAGGTTCCGTACGCGCATGGAGCTTAGTGAACACGTGTTAGTCCATCTTCCATTGAGAGCAATGTGCTGCTTTCCTGGCTGCTCTATGCAGCTTCAGAGTATGATGCTCCTGTATAAGCATGAAAAACTGCATTATGAAGAAAATCCAAATTTGGAAACCAAATCAATCCTGTGTAAAGAATCTGAACCATTAGTTCATGCAAGACTAGAAGATGGTATGGTGGCAGCAGCAAAGTCTTCAGTCAATCAGCTCACTACAACCATTTTGAAGGATTCTTCATCAGGAAAACAAGATGATGAAGAAAAACCTTTAGTTCTCAATAAAAGTTCTGTAAACTACAGTAGCAAGAACCACAGCCTTGTTAATGGGCATGATGAGACTGATAAAGTTGTTCCTCAGAAACCTTCAGATCCAGTCATTAAAGTGCAAGAAGCACCGGCtgcaaaaaaacagacaaataaacaatttattcgACCTCTCCCCTCATCTTATCTTGATGAGTCTTACACTAGCATGCCAAAACGCTGGAAGGAACTCCAGGTGGGCTCAAAGTTGCCAGGCACTGTGTCAATTCCAGAAATACCGCCTACCAGGCAACGTTGCTCTCGATGTTTTCAGTCATTTGACAGTGAGGAAGAGCTGCAAAAACACAAGGACAAATGCACATCGCTCTTTGGTTTCGATTCAGATGATGAAAGTGCCTCCTGAATTTGGAGAAGCAGCCTTTTCTACGGCGAAAACTGCTCAACGCTGCTGTAGGCAATCACCGTTCTTACATATGTGCTTAACATCTTTATCAGCATCTTGAAATGGAACTGAATGGGAAATAACTGATCCCTGTCTGTAGTCTTGTGTGACCTATCTGCTGCTTTTTTATAGCAGGTCTATTGCTAAAgctcatgtttttgttttttaacaaatcaTTAGTCTTTTTAAGACTTAGGGTTACAATATTTTTGTTACGTAATTGTCtgctttttcagaaaaaaaaagaatatgtttGTCTTTCTGTAAAATGCACAGCAGATGCGTTTTTGGCCTCTGTTGACTCTTCCTGTCCTTGTTTTGTCATTTCTGCTTGTCTTTTCAATTACTGGGTTTAAGAGGCCACCAATGACCCTAACACTACAAATTAAGAGTAAAAAAACTACTCTAAAAGGAAAAGTGCAAATGTTGTGATGgttaataaaggtttaaagtaGTGACAGTGGGTCAGGTGTCTACCAGTATTACATGCTGCTTTTTGAGCATGGATGGAAACTTGCAGGACACTCAAAGTATTGCAAGCACACTTTAAGTatgttcttttattattatttttttttaatccaaactTGATATGTGAACCTTTGTAAAAATACTGATTGCATCTTTTACAAATGTTATAAACTTCAAGACACTTGGGAAAAGTTAAAGACACGAAGTCTTTAAATGAAGGACTGTGACTTCTTTTCAGAAACTTAAAAGAACTGTTGGCCATAACAGCAGGCTGGTGCTGCTGGAAAGGCCGAGTCTTTAAGGCTGAAGTTTCTCCTGTTAACAGAGGAGTGTATATGTGCCACACAGCCTCATTGAACATTGTCATGACATATTTGAAGTGTCTTCTCTGTAACTCAAGAAACTCGAGAGGAGGACTAACTCATGTCTCAGACAGAGGCATGTTTAAAGCTGTTCCACAGATGAGCAGCACCAgtcttatttattcagtttttgttttatatctTCTGTAAATGTTTGAAGAGATTAAATAGTATATGATTGGATTGGGTGACTGGGTTTATATATCGAGAGCTTTTTTGGTCctaattaataaacacatttaaaaagtg

Function

symbol description
znf654 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF654 (zinc finger protein 654).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1423 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF654 (zinc finger protein 654).

Ensembl:

ensembl_id ENSDARG00000079350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000678 True 5977 mRNA 0.41 9 33647682 33663705

Neighbor

gene id symbol gene type direction distance location
XLOC_000396 htr1fb coding upstream 12378 33634186 ~ 33635304 (+)
XLOC_000395 chmp2bb coding upstream 78437 33558555 ~ 33569245 (+)
XLOC_000394 NA coding upstream 128859 33517802 ~ 33518823 (+)
XLOC_000393 dhrsx coding upstream 160307 33383644 ~ 33487375 (+)
XLOC_000392 mxra5a coding upstream 312950 33322174 ~ 33334732 (+)
XLOC_000398 arl13b coding downstream 4531 33668236 ~ 33694795 (+)
XLOC_000399 nsun3 coding downstream 33465 33697170 ~ 33722780 (+)
XLOC_000400 CU915566.1 coding downstream 71313 33735018 ~ 33735134 (+)
XLOC_000401 CT573012.1 coding downstream 303452 33967157 ~ 33967273 (+)
XLOC_000402 epha6 coding downstream 305310 33969015 ~ 34201195 (+)
XLOC_000390 BX322647.1 non-coding upstream 430964 33215241 ~ 33216718 (+)
XLOC_000388 CU915272.1 non-coding upstream 941455 32706109 ~ 32706227 (+)
XLOC_000386 CU462859.1 non-coding upstream 1133578 32513989 ~ 32514104 (+)
XLOC_000383 BX901898.1 non-coding upstream 1629567 32017437 ~ 32018115 (+)
XLOC_000403 dre-mir-734 non-coding downstream 459175 34122880 ~ 34122972 (+)
XLOC_000407 CR848003.1 non-coding downstream 736535 34400240 ~ 34400354 (+)
XLOC_000408 NA non-coding downstream 786954 34450659 ~ 34454447 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_03259617_03273490 NA coding CI01000049 null 3259174 ~ 3274591 (+)