G2085801 (LOC106581535)


Basic Information

Item Value
gene id G2085801
gene name LOC106581535
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44088275 ~ 44090215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2385280
AAAAAGttatatatgtttttattgtgAACCAAATTGGGGGTCAATTTAGGCCATTGctgtaaaaaacagaaaacataaTGAAAACAACAAACCTTTTCATATGAAAATAGCAGGTAAACACAAACACAGGGGTTTGGTCAATTGTTTGGTCAATATTAGTGAAAACTTGTGAAGCCCTATTTGCTTAACCACTTTATTCCACAGCCATTGGTATGACAATATTTGCTCAATATTTGCACTATACACATACCTGACAAGTATATTTACACAATTAAACACATAACTCCCACCTACAGTTGAACACATAGACACAACACATACAGGGAATTACACATAGGTCTGCTTAttgatattttctctctctctctctctgaacaaaATTAATCAACGATTGGGCCATTTCCAGCAAGAGACTTCTGGCCAGTTCAGtgcctctgtctcttcctccccacTCGGACATTTCAACAACGCTTGGATTCAAATAACTCAAATTAATTATATTCTATatattaATTATAATTTTAATGCTTGGTTCCAAGCTGTTCAAGCTGTCCATGTTGTTCTGGGCTGGGTTTCTCTCACATGTACTGGTTAGGAGCGTAGACCACAGATCCGGGTGGAGCTGAGTAGTTGGGTTGGTAGGAATACGGCTGGTACGCGTATGCTGAACCAGGCTGGTAGTTCACTCCAGGCTGGTAGTTCACTCCAGGCTGGTAGATGTATCCAGGCCCGTTGACCATCCTCTCCATCTCATCGTCTCCTACCCGGGGTGCGTGGCGACACAGCAGTATGACCCCAGCCACAAACAGCAGAGCCGAGGTCACCCATCCAATGTAGAGCGCCTCTCCCAGCTCCCTGCGCTGGGCGTCGATCAGCAGAGGGTTGTAGAAGTCACGGATGATCACGTTGGCCGTCCAGGAGATTGGGATGATGGTGGTGACACAACCCACGAGGAACAGGCATCCCCCGGTCACCAGGACGATGTGTTTGGTACGAGGCCGGTGGTCCACCACCTTGGTACACTTCATCCCCACGGCAGAGAGGATCAGGGCGATGGCGGATACAGCTACGGAGGAGCACATGAGGCCTCTGGCAGCCTGCAGCTCCGCAGGGAGGAACAGCAGAGAGTCGTACACTTTACACTGCATCCTGATGTTGGCTTGTCTATAGCAGTTCATCCACAGGCCCTCCCAGCGCGTCTCCATGACGATGATGTTCTCCTGAATAAATGCCGTCACCTTCCACATGGGCAAGCCGGTCACCGCGGAGACACCGATCAGGCCGACGAATCCGAAGACCAGCGCCACGACCTCGCAGCAGACGGCCTCGGAGCGAGCCTTCTTCTctactctcttcttctcctcgtACACTGAGTCCATGTACGACTTTGCTGCTTTCTCGTCGTAGGCCGGGTCAAAGTAGGACTGAGGCGGCTTCCCGTAGACACTGTAAGCAGTGGCACTGCCCATGTAGGACCGGTCCATTTTGGCTGGCTGTCGATTAGAGAACCTACCCGAGGACTGGCGTGTCACAGCTCTCCTGCCTCTATCTCACCAGCTGAACTAAATGAGAGGGCAGGAAACAAATGTCTAGGTGATACACCCTACAGAGTATGTTAACGATGCTACTCTTCTGGTTCAGGTGCTTTGTGACATCAGATAAACGAAGGACAGAGAAACTGGCCCTACTTGATTTGACGACACAAACAAGTTGATTTGAAAGCTGTTGAAACCAGATTTCACAGAGACAATGACTCTGTGGATTGAGAAATGAAGGAGTACAGTACGTGGATTATTCTGTGCTAAAGTAACAAAGCAGATTGTTACAGTTAAGGAAGtagaaacacaaccaaaaaaAACAAGCAATGATTAAATCACTTATTCTTACTAGAAGACGAAACTAAAAGTAAACAATACAAGTA

Function

NR:

description
claudin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2385280 True 1921 lncRNA 0.47 2 44088275 44090215

Neighbor

gene id symbol gene type direction distance location
LOC110508088 LOC106581525 coding downstream 305000 43769240 ~ 43783275 (-)
LOC110508089 LOC106581526 coding downstream 325399 43737070 ~ 43762876 (-)
tmem97 tmem97 coding downstream 529742 43556576 ~ 43558533 (-)
LOC110508094 tnfaip1 coding downstream 539071 43535555 ~ 43549204 (-)
LOC110519585 LOC106581519 coding downstream 558928 43295811 ~ 43529347 (-)
LOC110507241 LOC106581541 coding upstream 172750 44262965 ~ 44310016 (-)
gbe1b gbe1 coding upstream 272104 44362319 ~ 44721642 (-)
rwdd2b rwdd2b coding upstream 1345506 45435721 ~ 45442773 (-)
stoml3a LOC104925222 coding upstream 1583286 45673501 ~ 45686113 (-)
slc25a15a LOC106581545 coding upstream 1597739 45687954 ~ 45701584 (-)
G2085760 NA non-coding downstream 92834 43994982 ~ 43995441 (-)
G2085722 NA non-coding downstream 179119 43908393 ~ 43909156 (-)
G2085703 NA non-coding downstream 229316 43858734 ~ 43858959 (-)
G2085676 NA non-coding downstream 265055 43822802 ~ 43823220 (-)
G2085671 NA non-coding downstream 269819 43817929 ~ 43818456 (-)
G2085814 NA non-coding upstream 25966 44116181 ~ 44119124 (-)
G2085824 NA non-coding upstream 49615 44139830 ~ 44140805 (-)
G2085852 NA non-coding upstream 107979 44198194 ~ 44198743 (-)
G2085857 NA non-coding upstream 125055 44215270 ~ 44215926 (-)
G2085867 LOC105006673 non-coding upstream 141042 44231257 ~ 44232694 (-)
G2085726 NA other downstream 175595 43912160 ~ 43912680 (-)
G2084740 LOC106613316 other downstream 1303240 42784627 ~ 42785035 (-)
LOC118944786 LOC106581464 other downstream 2407583 41573411 ~ 41680789 (-)
G2083443 NA other downstream 2664235 41423539 ~ 41424040 (-)
LOC110508045 LOC106581475 other downstream 3113068 40967894 ~ 40977862 (-)
G2086783 NA other upstream 830694 44920909 ~ 44921312 (-)
G2087090 LOC106593344 other upstream 1440141 45530356 ~ 45530780 (-)
G2087288 NA other upstream 1706855 45797070 ~ 45798330 (-)
ndufc2 nduc2 other upstream 2882366 46972581 ~ 46975116 (-)
G2088345 NA other upstream 2913650 47003865 ~ 47004875 (-)

Expression


Co-expression Network