LOC110508312 (sppl2b)


Basic Information

Item Value
gene id LOC110508312
gene name sppl2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 897589 ~ 947373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966059.1
CGGGTAATTGGGAGATAACAATAAGCTAAGCAGCATGAAGGCTTCGCTAAACCTGGTTTGGGCAGTTATTTTCATAAAACAGGTTGTCGGGGAATATGGCATGGCCCATTTCAGAAACAAAAGCCAGAGCAAAGGAAAAGATTACTGCATCTTCTTCAACTCCCAGTGGGCTCGTCTACCTCAGCACCTCGACAAAGCATCCCGTCTCCAGATCTATGACCTGACACCGTCAGTCCTGTGTTCCTCGTCGGACGTCCCGGAGGGGGGCTTCACCAATCGTATCCCCATGGTAATGAGGGGGAACTGCACTTTCTACGAGAAGGTCCGCCTGGCCCAGCTCAACGGAGCTAAAGGCTTGCTCATCATCAGCAAAGACAGACTGACCCCACCAGCAGGAAACAAGACTCAGTATGAGAAGATTGACATCCCTGTGGCGCTGCTCAGCTACACTGACATGCTGGACATCAGTAAGACGTTTGGACAGGGCCGAGAGGTGGCCATGTACGCCCCGAGCGAGCCTGTTCTGGACTACAACATGGTCATCATCTTCCTCATGGCTGTGGGGACGGTGGCCATCGGAGGATACTGGGCCGGCAGCAAGGACATCAAGAAGCGCTACATGAAGCACAAGCGTGACGACAGCGCGGAGAAGCAGGATGAGGAGACGGTGGATGTGACGCCCATCATGATCTCTGTGTTTGTGGTCATGTGCTGCTCGATGCTCGTGCTGCTCTACTTCTTTTACGACCACCTGGTGTATATCATTATTGGGATATTCTGTCTGGCCTCGTCTGTTGGCCTCTACAACTGTCTCTGGCCCTTTGTGAGGAGACTCCCCTTTGGCAAGTGCAGgatCCCAGAGAACAACCTTCCCTACTGCCACAAGAGGCCTCAGGTCCGCATGCTGCTGCTGTCAGCCTTCTGCATCGGAGTCAGTGTTATCTGGGGCGTGTTCCGCAACGAAGACCAGTGGGCTTGGGTGTTACAGGATGCCCTGGGCATAGCCTTTTGTCTCTACATGCTCAAGACTATCAGACTGCCCACATTTAAGGCCTGCACCATGCTGTTGGTGACCCTGTTTGTCTACGATATTTTCTTTGTATTTATTACACCTCTCTTTACCAAGAGTGGTGAGAGTATAATGGTGGAGGTTGCGGCTGGTCCCTCTGACTCCTCCACACATGAAAAGCTTCCTATGGTGCTTAAAGTGCCCTGCCTCAACTCCTCCCCCCTGGCTCTGTGTGACAGGCCCTTTTCTCTGCTGGGATTTGGAGACATCTTAGTGCCAGgtctgcTGGTAGCCTACTGTCACAGGTTTGACATCCTCATGCAGTCCTCACGGTTCTATTTCCTGGCCTGCACTATCGGTTATGGTATCGGGCTGCTCATCACCTTTGTAGCTCTTGCCCTGATGCAGATGGGTCAGCCGGCACTGTTGTACCTGGTGCCTTGCACCCTCCTCTCCAGCCTCGCGGTGGCGCTGTGGCGCAAAGAGCTGCCCTTATTCTGGACAGGAAGTGGATTTGTGCTTCCCATAGTTCTGCAACCAATCAACTGTACGCAAACCCCAGGACCAACCAGAGAGGAGCCCCTCACCAATCCTGAACTACAAGGTCCTGAAGCAGAGGAGGACCCACTTCAGGACACACCCCCTCCAGAGGCCAGCAAATCAGAAAAGGATTTCTAGGATGCCAATTTCTTATTCATTTAGtttctattgttttttttttacaaaggttCTCTATACATTCGTAACAGACAGAAATTATGAACATTTCAGTGCACTTGGTGTgtaaagaggaggggaggatggatgaaAGAATGAGCGGGAGGGAGGGCACCCAACCTACAGTAGCTGTTCTTCATATCCTTGGGGTTGCAGGATCAGCCATGGGAGTCCTGGTAAATGAGCCAGACATGACCCAGGCTAAACAACACCAAGCCAGTCTGGGACAGGCAAAGAGCACAATATAGCTTCAATGGAAATTCTAACCAAAAGGAAGAGAGACCTGATTCTTCAAACAACTTAATTATAAGATTTCCAAAAACGGAGCAGTTAAGTCACTCAATTGTGCAGATTTTGGAGCCCAACGAACAGTGGGGTCTCAGCTTTTATATGAAAGTACAACCTCTTGGCAGATGTGTGTAAACGGGCAGGGAACAGTGTGTAAAAGATTAGTTTGTCTGTGCAGATTAAGATTGCACGAGGGATTACTCGTCTAACGGCATTTGCCACAGCTCACACCGTGCTCATTTCTGCAAGTTTCCACACAGCTGAGTTCTGGCAGATAGATAAAACGTGATGTCGCATGCTGCGTTTGCACCCAAACGGCTCTGAGCTGTCGACAAGATTGTATCAGGGGGGAAAAAACACTAGCATATAACAATAGACACTTCTCTAAGTAAAAAGTATGTCTAATTTTCTCACTACACACTATGCCAAAGTCTTGTTCACTACTCGGCTATTCCAATCGGACATGAGGAAGGTTGGAAATAAAGGTTTACGCTAACCAACACCCCCTGGCCCTTCCCATATGAGTTAGACCTCCGTGACTGAAATTGAGTCACACCACTATAGATGGCCTACTCTGCCCTGTTCAACCCCATATGATGTGGTCACCGATTATGTTCATGCATCTCCCATGTAGTCAGCCTGAGTCGCATCCAATACACATGACCTGTCCTGCTCAACACCCCACCCTCAACACCATCCTGTTcagtttgccccccccccccccccaaaaaaaatgtatatgcagaaaagcattcaataattttttacatttaaccagGTGAGTCCCATTGAATCTATTTTTTTAAGGGAGGCCTGGCAGCCATTATAATCTACACTACTAGAAGGTCAATATGTGCATTCTAAATTACACCCTGTTCCCTaaattgggccctggtcaaaagtagcgcattGTATAGGAAATGGGGTGCGATTTGGGATGATACCACCATTATAAATCTGTCGGCTTGTTccctttctttttcttctttaaGTACCATGAAGAACGAAAGAGCCACACTACGGCCTGTCCTCTGTACATCAAAGATGACTGAAGTATCAGACATACCCTTTTTCGTGTGGTGCTATCATGTATTCTCAACCAGCCAAAGGTATATGATAATAATGATTATTGATTTAGGGCATAAAGGGACACTGTCCTAGTGGACTAAAAAGCAAGCTTTGTGGAGAATCTTCATGTAAAGTGTTTATATATCCAGAATAAGACTTAATCTGTGTTTGGGAAATCTTCccaaatatctatattttttttatcttagCTTGCTATGGGTTTGGTTTGATCCAGGctgttttatatacatttaaGGTTGTCCCCACTCTTTTTCCAGTAGATGTTGTGGTTCCACTTCAAATTAGGTGTAAAACCCATGTATGTGTTTAATTACATTGTAGGCAGTTATGTAAGAATGTTTGCCTAGGTAAACAGTTTAAGTTGTAAGTACTAATTCATTACACTAACTACGTTATAAGGAGACTTAGGGCTCGATTCAGCGCTATAGCACGATTGAAAGGCAACGTTCTcgctgcattcacggtaaacgctgtaTATAATGGCTCAAACTGAAATTACCTTTATTTCAAGTGCACAATAGTGCTGAACTTCAGCAATACGGATTGAATCAAACCCCCTAGATTAACCGATTTGTTTATAATATTCAATATAGCCTTAAATGGGTTTTGGCCTTGTATGTCTGTGCATATTGTTTTATGAAGACAGAGGCGGACAGCTATCTAAACTTATCGTAAGCATGGTCTAATTACCGATAGGGTGGAGCCATTGATCATCAGTTATATTAACTGCAAACatggggcctcctgagtggcgcagcagacGAAGTCACTGCATCGCAGtacttgaggcgtcactacagacccgggttcgatcccaaccggccgtgacctggtgtcccatagggcggcgcacaattggcccagggtcatccgggttaggggatgtTTGGCCGGGGGTCTTTACTTGGCTCATAGCGCTCTAGctactccttgtggcgggccgggcacctgcaggctgacttccggtagtcagttgaactgtgtggcaaaatgtgtagaattacaggaaattagctttaaaactacaCATCTTTCTTTCCGCCCCATGGGaaagtgtagaattgcagcacaattttctctacgccccatggcaaaatgtgctgAATGGCAGGAAAGGAACGTTAAAACATAAGTTCTCTGCTGTCACGGGGGTGGGTTACTAAAATGTTTTGGTCGCaaagtgtgtgttggggggggtacGCAACCACAGCAGCcctaaacaaagagttgcagtccgTTTTACCTTAGATTATATAATGTAATGGTCAAAACATTGATTTGAGAGTTGTAAAGGTAGGGTGAGGTCTGTGCTTTTTTGACAACAcacacaaagcaagtcctgcaggctcaaGTTTTATCTTCACTTGattactgtccagtcatatggtcaagtgctgcaaagatggccctagttaagctgcagctggtccaGAATAGAGCAGCACATTTAGCTTTTAATTGTAATTAGAGGGTTAATATCAATtatatgcatgccagtctctcttggctaagagttgaggagataCTGACTGCATCAATTcctgtttttataagaaacatgaatgtgttaaATTCCAGATTGTTTGcaatagtcaacttacacacacacacacttaccccaccagggatcttttcacagtccccaggttcagaacaaattcaaggaaacatacagtatgattgcacggaactcccttccatctcatatggCACAAGTGAGCAGCAAACCTGTTTAAAACAACAAATAAAGCAACGCCTCTCCATGTGACCTA

Function

symbol description
sppl2b Enables aspartic endopeptidase activity, intramembrane cleaving and protein homodimerization activity. Involved in membrane protein ectodomain proteolysis; membrane protein intracellular domain proteolysis; and regulation of immune response. Located in several cellular components, including bounding membrane of organelle; cytoskeleton; and nucleoplasm. Is integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane.

NR:

description
signal peptide peptidase-like 2B

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050819 negative regulation of coagulation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K09597 SPPL2B; signal peptide peptidase-like 2B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966059.1 True 4875 mRNA 0.46 16 897589 947373

Neighbor

gene id symbol gene type direction distance location
LOC110508306 LOC106600515 coding downstream 314165 555687 ~ 583424 (-)
LOC110508302 LOC106587021 coding downstream 667997 181782 ~ 229592 (-)
LOC118944809 NA coding upstream 41412 988785 ~ 991348 (-)
phc3 phc3 coding upstream 58515 1005888 ~ 1029028 (-)
LOC110508204 LOC106600525 coding upstream 258402 1205775 ~ 1208298 (-)
LOC110508319 LOC106600498 coding upstream 400391 1347764 ~ 1353801 (-)
LOC110508320 NA coding upstream 445893 1393266 ~ 1394586 (-)
G2093257 NA non-coding downstream 25383 871804 ~ 872206 (-)
G2093235 NA non-coding downstream 53660 842279 ~ 843929 (-)
G2093142 NA non-coding downstream 191118 704034 ~ 706471 (-)
G2093023 NA non-coding downstream 378880 518427 ~ 518709 (-)
G2093310 lsm7 non-coding upstream 5558 952931 ~ 954323 (-)
G2093316 NA non-coding upstream 9692 957065 ~ 957363 (-)
G2093424 NA non-coding upstream 68008 1015381 ~ 1015763 (-)
G2093490 NA non-coding upstream 158029 1105402 ~ 1107594 (-)
G2093491 NA non-coding upstream 160829 1108202 ~ 1108464 (-)
G2092886 NA other downstream 562650 334529 ~ 334939 (-)
G2093433 NA other upstream 88055 1035428 ~ 1035674 (-)
G2093581 LOC106600502 other upstream 208661 1156034 ~ 1164637 (-)
LOC110508327 lig1 other upstream 756440 1703128 ~ 1742400 (-)
G2094433 LOC106600477 other upstream 959534 1906907 ~ 1907412 (-)
G2096163 NA other upstream 2361771 3309144 ~ 3309674 (-)

Expression


Co-expression Network