LOC110508316 (LOC106600506)


Basic Information

Item Value
gene id LOC110508316
gene name LOC106600506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 996942 ~ 1004291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965924.1
aaaatatatgtaatctCTCCCAGACACACTTAGCTTTACCCGGTAGTAAACCTCGGGGTAGACCCAGAGTTAGGCCAAAGAACTCGGCTACAGTGAAGGGAGTGAAGACTCAGGGTGGTAAGAAGAAGGTGAAGGCTGCAGCAGAGGGAGGGTCCCAGACCTTCAGCTCTGAGGAAGGCCCCCCAGCCAAACTCAGACGTAGAAGCAGGAAGGGccagacagcagagggagctggCCTGCAGAGCGGTTACACTACCAGCACTGAGCCACGCTCCAGACCAAGGTTTGAGCTGCAGGAGTCAGACtcaccagacacagacacaggagatGCCTCCCTGTCCTCAGACCTCTCCATCGAGTTAAGCGTACAGGAAGACCGTGTAACATCACTGACTcttgaagaggaggaagagcaaGACGATGAGGAAGATCTACCCAGTTTCTTAAATAACACAAAGCCACTGTCCATAACGGAAGGAATATGTGTTTGGTGCAAATTTAGAAACTATCCTTTCTGGCCGGCAATGGTGAAGAGTGTGAACCATAAGCTGAAGAAGGCCAGCATTGTGTTTATTGACGACCTGCTGTTTGACAAAAAGAGGATACGAAAAGGCTTTTCTGTGTCCCTAAAAACATTGAAGCCTTTTGACTGTGAAGAGGCTGATCAGCTAGTGGTAAGGTGTAAAGCCAGAGAGAAGTATGATGCTGCCATCAAATGGTGTCTGGCGTTGATAGCCGACTATAGAATCCGTATCGGATGCGGCTTCACCGGTTCCTTCATTGAATACTTTTCTGATGACATAAGCTGCCCAGTGAGAAGGTGCTACCCCCGGGGCACCTCAGACCTCACCTTCCCCAGTAAGCTAATTCTGGAGGAGCAGTACGTAACCTCTGACCCGGAAGGGGACGATCAGGAGGGCAGCAAacggcaggaggaggagaggaggaggaagctgCTGCCTGACCGTTCCAAGGCTGCACGTAACCGTGCCAACGAGAAACTGGTGGACTTCGTCGTCAGGCAGCGCCGGGTGGAGACACGCCTTCTAggCGTAATCAGTGGTCAGCAGCAGTCTAAGTGGCTGCGTTGGTTCCTGGCAGCCAGTCGGTCAGTTGTGGACACGTACCTGGAGGACGAGGAGCAGCTGGACCAGGTGTACCAGTACCTGAGAGGGGTGTACGAGACCGCCCCCCTCACCGCACCCTGTCTGGCCGATGTAGACCTCATCCGCTTGGTACTGGACGTGCTGTTACCAGAGGCTATTATCTATGCCATAGCCGGAGTAGACAAGTTGTCACTGGTGAAGGCAGAAGACAAATACCTGAAAGGGCCCTGTCTGAGTAAAAGgGAAAGAGAGGAGTTTGATGCGATGATCGAGCAGCAGATGAAGACGAAAGCATCGATCCGTCAGCATCCTGCACACTGAACATAACACAGTCTACTTGGCTTCCAACCCTCAGACTAAACGGGCCATAGGGTTCTGGTAAAAAGTAGTTTgaatagtgccatttgggatgcagcctcagAATGCCAGTGTCCTAATCAAATGATGCTTCTAAGCATTATAGGACAGGAAATAAGTAAGTAGCCTTGTCCAAGAAAGAACAGCCAGTAAGGTAGAAGCCTTTTTCTGTACCGTGAAGCAGCTTGATATACAAGTACACCCTCTGGCCAGGACACTGGTCTATCGCAGACAATAAGAACCATATATAACGGTCTCTAAATGTGGCTCTGAGGACAATCAACTGCTGTTGTACATGCTAGCAGTGGTGTGATTTAACAAAACTACGTTGAATTATCAAGTCATTGTCAAATCATCTGAAATCTGTGATCGACTGGTCAAGATTTACAGCTTCAACACGGAACTCCTGGGAGGGTGGGACCTCGTATAAGACTTATGCCGCTGGTTGAAACTGGGACTTCATTTTAGACCCACTGCAACCGTATTTGATCCAACATGGTCGCCCGTTTAGACAGTTCAACTGTAAATTCAGGACATTAAAGACACTACTCTATTTTTCTATGGAAAAGTCTGCTCTTTTTTAAATAAATAGTCATATTTGAA

Function

NR:

description
uncharacterized protein LOC110508316 isoform X1

GO: NA

KEGG:

id description
K23386 PWWP3, MUM1; PWWP domain-containing DNA repair factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965924.1 True 2066 mRNA 0.49 10 996942 1004291

Neighbor

gene id symbol gene type direction distance location
LOC110508203 LOC106600526 coding upstream 10350 984456 ~ 986592 (+)
LOC110508314 LOC106600507 coding upstream 12750 970023 ~ 984192 (+)
LOC110508313 lsm7 coding upstream 42608 947539 ~ 954335 (+)
LOC110508311 LOC106600508 coding upstream 100660 874311 ~ 896282 (+)
LOC100136604 LOC106600510 coding upstream 138836 733004 ~ 858106 (+)
prkci LOC106600503 coding downstream 32231 1036522 ~ 1107598 (+)
LOC110509188 LOC106600502 coding downstream 121533 1125824 ~ 1160925 (+)
LOC110509189 LOC106600499 coding downstream 239677 1243968 ~ 1317532 (+)
LOC110508321 LOC106600497 coding downstream 398436 1402727 ~ 1414817 (+)
LOC110508331 LOC106600487 coding downstream 787428 1791719 ~ 1798195 (+)
G2093326 NA non-coding upstream 30694 966011 ~ 966248 (+)
G2093321 NA non-coding upstream 34418 962267 ~ 962524 (+)
G2093319 NA non-coding upstream 35356 961338 ~ 961586 (+)
G2092684 NA non-coding upstream 39117 957612 ~ 957825 (+)
G2092683 NA non-coding upstream 39546 957078 ~ 957396 (+)
G2093363 NA non-coding downstream 11785 1016076 ~ 1016542 (+)
G2093365 NA non-coding downstream 13242 1017533 ~ 1017760 (+)
G2093378 NA non-coding downstream 26084 1030375 ~ 1030794 (+)
G2093500 NA non-coding downstream 110408 1114699 ~ 1114995 (+)
G2093631 NA non-coding downstream 217540 1221831 ~ 1222188 (+)
G2092558 NA other upstream 302284 694133 ~ 694658 (+)
G2093889 NA other downstream 440342 1444633 ~ 1446121 (+)
G2093960 mpz other downstream 679815 1684106 ~ 1696486 (+)
LOC110509192 LOC106600604 other downstream 1089853 2094076 ~ 2190557 (+)
G2094884 NA other downstream 1649572 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1896559 2900784 ~ 2969598 (+)

Expression


Co-expression Network