prkci (LOC106600503)


Basic Information

Item Value
gene id prkci
gene name LOC106600503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1036522 ~ 1107598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588751.2
CTACATTCCGCTAATGGATTCGTCCGTCGTGAGGCCTTATTGCAGTAGGGAGTGTTGTTTGGCGGACTCCTGAAGTTGTACACTACTTTGTCTGgattttgtcaaattaacaagaCTCAAATTGTTATTTTCCATAGCAAGTCAGCTATCTAATTGTTGTATCTATCGAGGCAAGTTACAGAGGAGATTGTTTTCGGCGTGGTACACAGCTAAATTTGTCGCAGCCAGAAGGAAAACATATTTGGCGTGCGGAGTTCCGATTCCGAGGGCTTATGATGCCGACGTTGCGGGACAGCACCATGTCTCACCCCGGCGAAAACCCTCACCAAGTCCGGGTAAAAGCTTATTACAAAGGGGACATTATGATCACACATTTTGAGCCATCCATCTCCTACGAGGGTCTGTACGGGGAGGTCAAAGACATGTGCTCCATGGACAACGACCAGCTCTTCACCATGAAGTGGATCGACGAAGAagGTGACCCGTGTACAGTATCGTCTCAGCTGGAGATGGAGGAAGCCCTGAGGCTCTATGAACTCAATAAAGACTCTGAACTCATCATCCATGtgTTTCCTTGTGTCCCAGAGAAGCCTGGCATGCCCTGTCCAGGAGAGGACAAGTCTATATATCGTCGTGGAGCGAGACGCTGGAGGAAGCTCTACTACGCCAGTGGCCATGCCTTCCAGGCAAAACGCTTCAACAGGAGAGCTCACTGCGCCATCTGCACAGACCGTATCTGGGGTCTGGGGAGACAAGGTTACAAATGCATCAACTGCAAATTGCTGGTCCACAAGAAGTGTCACAAACTGGTCACCGTGGAGTGTGGCCGACAGATGATACAGGAGCCTATCATGGGGCCTGATAGAGGGGCCTCCATCACTCCATTAGACCGATCAGAACAGCCAGGTCATCAGAACAAAGATTCTAGTGAGAGTCTAAACTACaatggagaagagaaagagGCACGCAGCAGCAGAGACACAGGGAAGTCAGCGTCTAGTCTTGGTCTGGTGGACTTTGACCTGCTGAGGGTGATCGGACGGGGCAGCTATGCGAAGGTCCTGCTAGTCCGACTCAAGAAGACTGAGAGAATCTACGCCATGAAGGTCGTCAAGAAGGAGCTGGTCAACGACGAtgagGATATTGACTGGGTCCAGACAGAGAAGCACGTGTTTGAGCAGGCATCCAACCACCCATTCCTAGTTGGGCTACACTCCTGTTTCCAGACTGAGAGCAGACTGTTCTTTGTCATAGAGTATGTAAACGGAGGAGACCTGATGTTCCACATGCAGAGACAGAGGAAGCTACCTGAGGAACATGCCAGgtttTACTCAGCAGAGATCAGCTTGGCGTTGAACTACCTCCACGAGAGAGGCATCATCTACAGAGACCTCAAACTGGACAACGTGCTGCTGGAGTCTGAGGGACACATCAAACTCACTGACTATGGCATGTGCAAGGAGGGCTTGAGGCCAGGAGACACCACCAGTACATTCTGTGGAACCCCCAACTACATCGCCCCCGAAATACTAAGAGGAGAGGACTATGGTTTCAGTGTGGACTGGTGGGCGTTGGGGGTGCTGATGTTTGAGATGATGGCTGGACGGTCGCCCTTCGACATCGTAGGGAGCTCCGACAACCCAGACCAGAACACTGAAGACTACCTCTtccaagtAATATTGGAAAAACAGATCAGGATTCCTCGGTCGTTGTCAGTCAAAGCTGCCAGCGTTCTCAAGGGCTTCCTCAACAAGgaACCTAAGGAGCGGCTAGGCTGTCATCCCCAGACAGGCTTTGCTGACATCATGGGTCATCCCTTCTTCCGAAACGTAGACTGGGACCTTatggagcagaagcaGGTGGTTCCTCCATTCAAACCCAACATCTCAGGAGAGTTTGGACTAGACAACTTTGACGCCCAATTCACCAACGAGCCTATCCAGCTCACGCCTGATGATGATGATGCAGTGAAGAAGATCGACCAGTCGGAGTTTGAAGGGTTTGAGTACATCAACCCTCTCCTGATGTCAgctgaggagtgtgtgtgaggaCGCTGCACGCCGCGTCTTCTTGACAACGACGTTGCTAGTTAACTCTGCATGGTTACCAAACAACCCATCGACGGCGTCACCATCAAGCACCCTGCTGTTGGAGAGAGCCATCGGGACTCTCAGACATGAGATGCTAACTTGCCAAACCAATCTCCCATAGTGTGGACGCGTCCCATTTGGCACCCTATACCATACATAGTGCATTAGAGAATAGGAGGCCATTTTGGACGGAAGCCACTCTGCCATTTATAACCACTAGTCCTTAAAATCTACCTTCTCTCTTTTAATTATTTTTGGATCATGTATCAAATCCACACTGATTTCCTCGTTGGTCATCAGGGAGCCTCTTCTCAGTAACCAATGAGGCTTGTAGGTGGTTGGGTACCTAGTTTACATGACACAAAGGGGCGGGGGAAAGAGGGACACAGACAGTCCACAGAGAACGAACTAACCCTCTTATTTTCTACTTGGTGGTGTTTGATGGATATTTTATTTGTACATATTAAAAATCATTGAGGATGGATATATgtttagaccagtggttcccaaccagacCTTTTTAGCTTTAAACCAGATTATCAGGGGGACATGGTTGAAAACAATTGAATGATTTACATCACCTACATGTATTATTAGCTTTGTTGCAGCACCATGTTTGTAGAGGAAGGAAGAACAAGACAACACTAgccttttttttaaaacaaaacacTAATCTATATATTTTTCAATTAAATAGCTGTTCTCTATGTATGATGGCCATTGTCGTAAAGTGTCACGTTGTCTTCAAGCCTGGTGTCCTGTCAGAACCACATAGGTTGGCCCACTATTGTTTGTTTACAGTAGTTGTCCTGGCAACCTCAGTACATAGATGGTTACAGGATGTAGTGACTGACTGGAACCTCAGCAGCCAACCAACACTAACATAGATACTGACAAAGGGCAATTGGcaaatctcaaatggcaccctatgtctCAAGTGCATTACAATTGTATACTACACTACGAAAAGTGCActattaagggaatagggtgccattttggatgcaaccAAACTGTGAATAGAACAATTGACTGTGTGGAGAGAGGACGGGTAGGGCTGGAGCACTAGTTAAGTTTGGGGactcctatgggtcctggtcaaaagtagctcactatataaggaatagggtgccatttgggacagacccTATTAGTCTATGCAGATATAGACCATCCATGCAATCTATTGTTCACAcaggaccaacaaatattttctAGAGAAGATGTTAATGATGTCTTGGTGGTACGTTGAAaaaggtacagtatatatacagtaggaAGACGTGCTTTTCTAATCTTAGAAACTACGTATGACATTTATTTTCTTCATTTGTACTATACAATGCCTTTCTGAAAGTCTTATTTCTGTTTTCACTTTTTTTTCCCCTACTGTTTTCTCCATTACAGTCTGATTCTGATTGCTACAGTATACAAATGGACCATCACTGATTCTTGAACCATTTCTGACAACGTAACGATAGATTTCTTGAATGAGATTTTCTTAAAATCTGAGAAATTACAAACACTATCAATACAAAGCATATAAAAGCAAAATATTATATTCCCCAAATAGTTTATTTAAAGATTAATGTTGTCCTaaatggaatcctattccctacattccCTACTTACTTTTgactgcactatgtagggaatagggtgccatttgtaacGTAGACCAATTCTTCTGTTGAGATGTCGCTGAAGAATTTAACTAAGGTTAAGAGTATAAAGTGTGTGCCCAAATGGTATCTATagatcctggtcaaaagtagtgcactacatggaaTAGTAGGGTGCCATTCGAATTACATCCGGAGTGTTTTTAGCGGGGCCGTGTTGTGATTGATTGAAGGAATGAACACAATGTTTACCATGCTACTTTATATTGTCGTGTCTTTTTTGCTTTGTTACTTTTTTCAAATAGAATTTGCTGTAACTAATGATTGAGCACTACATTGATTGGTAATATTGCTATTGGGTGAATCCTGTATGGAAACCCTTGGATGATGAATATGCGTGATTTCATCCAGAGGAACCTACTGAACtgtaacaaaaataaacattttatttccCTT

Function

NR:

description
protein kinase C iota type

GO: NA

KEGG:

id description
K06069 PRKCI; atypical protein kinase C iota type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588751.2 True 4168 mRNA 0.45 17 1036522 1107598

Neighbor

gene id symbol gene type direction distance location
LOC110508316 LOC106600506 coding upstream 32231 996942 ~ 1004291 (+)
LOC110508203 LOC106600526 coding upstream 49930 984456 ~ 986592 (+)
LOC110508314 LOC106600507 coding upstream 52330 970023 ~ 984192 (+)
LOC110508313 lsm7 coding upstream 82188 947539 ~ 954335 (+)
LOC110508311 LOC106600508 coding upstream 140240 874311 ~ 896282 (+)
LOC110509188 LOC106600502 coding downstream 18226 1125824 ~ 1160925 (+)
LOC110509189 LOC106600499 coding downstream 136370 1243968 ~ 1317532 (+)
LOC110508321 LOC106600497 coding downstream 295129 1402727 ~ 1414817 (+)
LOC110508331 LOC106600487 coding downstream 684121 1791719 ~ 1798195 (+)
LOC110508332 LOC106600484 coding downstream 696196 1803794 ~ 1836904 (+)
G2093378 NA non-coding upstream 5728 1030375 ~ 1030794 (+)
G2093365 NA non-coding upstream 18762 1017533 ~ 1017760 (+)
G2093363 NA non-coding upstream 19980 1016076 ~ 1016542 (+)
G2093326 NA non-coding upstream 70274 966011 ~ 966248 (+)
G2093321 NA non-coding upstream 73998 962267 ~ 962524 (+)
G2093500 NA non-coding downstream 7101 1114699 ~ 1114995 (+)
G2093631 NA non-coding downstream 114233 1221831 ~ 1222188 (+)
G2093640 NA non-coding downstream 121890 1229488 ~ 1229698 (+)
G2093644 NA non-coding downstream 123354 1230952 ~ 1231152 (+)
G2093645 NA non-coding downstream 123795 1231393 ~ 1231680 (+)
G2092558 NA other upstream 341864 694133 ~ 694658 (+)
G2093889 NA other downstream 337035 1444633 ~ 1446121 (+)
G2093960 mpz other downstream 576508 1684106 ~ 1696486 (+)
LOC110509192 LOC106600604 other downstream 986546 2094076 ~ 2190557 (+)
G2094884 NA other downstream 1546265 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1793252 2900784 ~ 2969598 (+)

Expression


Co-expression Network