LOC110509188 (LOC106600502)


Basic Information

Item Value
gene id LOC110509188
gene name LOC106600502
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1125824 ~ 1160925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965927.1
AAACCAACCAGACTGCGAGACAGACACCCCTGCACAATGTTTCCGTGACGTGCCCAATTCGAGTCTGGGTGACGTATCTCCGTTAGTGATGTGACGTTGCGGGGCTCTAGATGTAGTGGTTTCTAGCTGCATCTTGTTGACGCTCGGTATTACAGATGAGAACCGAGAGAAGAGGAGCCGAAACGACCTCACTCAGTCTTTTTAATCGGGTTTCGGAAGCAGACATACAGACAACAATCTGAACAGAAACACAGCAGTCTCCACCATGTACCTTTCTGAACACCAGAAGATCTGGAACATTTGAAACGAGAataaaacaaactaacaaaacccACATTACCTCAAAGGGTTCTATAAATCCAAGTGAAGGTGGTATTGGAACAAAACGGACCTCTATCAACGCCGACATGGCCAGTACTCAGACAAGTCTGAAAACCTCATTCAAAGATCTGACCTCGTTCAAGGGCAACATGAAGCGGCTGTACCGAGAGAGGCTAGAGGACGCGCCCATCAAGAAGAGGCTGATGGCTGAGATGAACCTGAAGCGACGCAGCCTAGACACCCTGCCCCAGACCCCCAAGGTGAAGAGGGAGTCTGGGGAGGAGCACACCCAGCACCGGGAGGCAGATAGAGGCATGGATAGATCCATAGAGATGGACAGTAGAGGGGAGCTCCAGGTATGTGGAGCCAAGGCTCTGGATCTCAGTCCTGGGCTGAAACACACACTGGCTGCCTTCACCCTCAGCAGCCAAAGCTCTCTGGGGGGCCCAGCAGCCTTCTCAGCCCGCTCCGGCCACGAAGCCTCCCCCGAGGTCAGCCCTGATTCCTGCCCCAGCATGGCCCCTCTACCCTCCCCACCAGTCCTAGGAGGTGGACCCCTCTTGGTGCCCAGCGACAGCTCCACAGAGTTAAGCCACTCCCTTCTAGAGGGTGAATCCATCTCCTGCTTTGCTGTCGGTGGGGAGAAACGCCTCTGCCTCCCCCAGGTGCTCAACTCGGTGCTCCGTGACTTCTCCTTGCAGCAGATCAATGCGGTGTGCGACGAGCTCTACGTGTACTGCTCGCGCTGCGACGGTGAACAGCTCCACATCCTCAAGGTGCTGGGTATTTTACCCTTCAATGCCCCGTCTTGCGGCCTCATCACCCTTACCGACGCCCAGCGCCTCTGCAACTCCTTGCTCCGCCCGGGGGCTGCCCTGCCCTCTGACCCCAGCACCAAGCGACCCGGCCAGGGGCTCCTAAAGGAGACCGAGTCTAGCTTCCAGGTGGAGCACCAGTGTCTAGGGAAATGCCAGGGTCTGTTTGTACCCCAGTTCTACACACAGCCTGAGGCGCCCTGTGTTCAGTGCGTGGAGTGCCAGCTGCTTTTCTCACCGCAGAAGTTTGTGATGCACTCACACAAGTCCCCGGACAAGAGGACCTGTCACTGGGGCTTTGACTCTGCCAAGTGGCCGTGCTACCTGCAGCTGGGAAGAAAGTATATGGGAATGCCTGAGGAGCCGCAGCTCAAACTGCTGCTAGAGGACATGAAGGACAAGTTCCACTACAGCAGGACCACTGACAAAatGGAAGATGAGGACAAGGACACCCAGGTGAGGAGATCGCGTCCTCCTGAGCCTCTGGTTTCTCCTAACAGTAAACTGGCCGACAGCGATGCAGCaaccaagGCTAAAGCCCAGGCTACTCTGGTGTTCAACCGCCTGTTCCCCCACATTAAGGAAGAGCCTGGCCACCCTGCCATGGTCCATCCCAGtcacTTCCTGTATACATATGATAAGATGGTGGCTCCTAACGTGTCTCTGAGGGGTCAGCCGGAGGTCAGCCCTGAGGTACTGGGGGTGCTGCTCAAACACCACTACAGCAGGAGACTGACCCACGGCCACGGCGACACTGCTATGGATCTCCACGCCTCTCCTGTAGTTGACGAGACCAAGTCTCAGCAGCGCGTCGTTTCCGCTGCCGACCGGGAGCGCCAGCAGCCAGTTTCCATGGAGACCAGCCCCGGCAACAAGAGTTATTCTGCTATAGCGGGAGCCACGGCGACTGCGGCGGTAGAGTCATCGGTAGCGGCGCTGGGGAGTAAAGATGTTCTGTCTTCAGGCTGTGAGGACGACAAGGACAGGATCGTAGTGGAGATCGTTCAGATGTACAGCAGACAGCAGGAGAAACTGCACTCCACCCTGCACAAACAACTGCATCTAGAGATGGAGTTGGAGGCGCTGCGTGGAGGCGAGGCGGCCAGGCTGCAGCAGTTGTCTGCAGAGCAGCGTGAGCTGCAGAGTGAACTGGAGGcagttcacactgagcacactcAGAAACTGGGGCAggtgagggaggaacagagggagtTGGAGCACCGGCTGGAACAGCTGCGAcagcagagctgtgtgtgtgacaacagcatacacacacaccaggaggCACACTACGCCAATCAGcTGGCAGAGCTGCGTGGGAGGTTGGATGGTGCGGAGGCTGACAGGGAGGAGCTCCAGGAGGAGTTGAAGAGGGAGCGGGACGCCCGGGAGAAGCTGGAGAGAATCATCTCTCAGCTCAAACACCAGATGGACCAGACGGCCTCTTCCTCGTCTTCCTCGGCCACCACAATTGCTACAGGGAGCCCCTCTTCAAACCCCACCCCCTCCACACAAGCACCCCACACAGAGGGACACATCGCAGGCCTCGAGCAGCAGAACGGCCACGCTCAGAAGTAGCCCCTCACGAAACTCCCCTTTTCCATTTGTCTCTCAACCCCCACCCCCCAAGCGCCCTGCTTTGTTCCTCCAACTCACTCCCTCATCCCTCACCTCCTGCTGGCAGAGACGGCAgccctagacagacagacagacagacagagtactCTGTCCCCCAAGGCTGCTTCTCTGCTCTGTCTCACCCGCTTCCTTCCTGGTCCCTCCCTCGTCTTTACTTCTTTGGAAAAGGAACTCCCGTTGGTTTTTATTTAACATCACATGAAATGAgttttatgtttgttttttattcCTCCTCACACCCCCTATCCTTAAACAGTATTTACATTTTGGGAAGTATATGTTTGTTTTAATTTATAGTTTTACTGAACAAACTAATGACTGCTTGGCAGACCGATAGGAGTTGGATGTTTTTAGgaccctttcctccatccctccctccttccttggACTTGATGTTTTGTCGCCCCCATAGAGACCGGgaagtcagtcagacagaaagacagttctCTCCTGCACCACTCGACTCTGTTCTGAACTCTGGTTACACTAGCGCTCAGTCGCTCTTTCTACTACTACCTTGCACGCCAACTGGAGCCAAGATGGTGCCCGTGTGGGTGCTCTCAATCTTTGTACAtacacccagcccagccattctGGACCAGCTACCAGCCACACACAGCAGTAAACTGCATTGACAGACATTTTCATTTCACCTTTGTCTGTTTTTGTACTCTTATTCTTGGTAAGAAGAGAAGTTGAAAGACAAAAGTTCTACATGTATAAAACGAAGGTATATGAAAACTTTATTGTACAGAGCATTTGCAGTCGTCATTGTTAAGCCTACTGAAAATGCTGAAGTGATATTAAGATGTAAAGACATATGAGTGATGTGACTCTGAGGACTGCTTAGGTTGTTGTGGTCTGGAACAACAACAAACCCCTGAACTAGTCTGGCTCGGTCTGTTTTGATAGGACatgtcactcacacacatacacacacacaccaaatttCCTTGTAGAAATCTGCAGTTTGTCCTGTTTTAGTTTTGATTTCCCTGTTGGCAGCAGTTGGTGTGTTTGCCATCCTCATCTCTCCTTCTCGTGAGAGCAGCAGAACCTAGCTGTCTGCTTGGTGAAATGTGGGTCACAGGTGAATGGAATTAGTGCAGATTGACAGAGTGTGGTGTGGGCTGGCTGCTGCCTTGGATCCAGGCCCCTGCTTCCTCCGCGTTATTCCAACTCACTGAACAAACAGAtcctgagagggaggagggaaagaccAGGATTCAGGGAGGGAGGTACAGTCAAGCGGAGAGAAATGGAGGCgggggaagagaggagtgagagagagaaaggggattgAGGTAGTGCAGGGGGCTGATGCCCTCTCTCTTGAGCTGGGTGGGCCGGGTGCGggtgatgaggaggagagaggagcctcTTGTCCTGTCAGAATTGGGGCAGTTTCTATAGTCtggggcctctctctctcctgccccggGGAGCTGGTACAGgagcccctctctctgccccacaCACATcgccatctctccctcccacaaACGTACACACAGAACTGGGGTTTTGTCTAGTTGCCAGACAGTCTTTCTTTTATAGCCTCCAGGCAGAGCCAGGCAGCGTGTAAATAGTTGTTTAAAAGAGGTTTTGGCCTTGGCTTTAACTACAAGCTGCTTTTTTATGCATCTGCTGTACATGCAAGTTGATAGACATTCCACTGTGCTCAACTATTCAATGCAGATCTCTAAAGAGAATTCCCTACAACATACTCAATGCTCTGCCAGAGTACTAAAGTATAGTAGGTCTTATTTTGTAATCGAGTTTCAACTAAGCTACAAAATGTTATTTTCATGAGGAGAAAAACGACAGCGATGAAACTAACACCCTTGGTGTGTGACGTGAAGTTCACTCGCATGTAGAAAAATCCAATCCATACTGCAAATGTATGTTCTCTACCGACCATTGTTCCATATAAACCTTTCTTGGAAATTGTAAAcaaaagaaataaataaaaatatatttaatgtatTAATTAAAGATTTATATTCACTTTGTACATACATTAGTCATTTAATATATTTACTGTGTTGTTATGGGATGATCTTTTAAAggttattataatattaactaGGCCATGCCCGAAGCTCTAAACAGCCCTGATGTTTTTGTTAACTCTGAATTCTTCAAAGATTCACTTAACTTGTTGTTTACCCTGTTAAAGGGACAATACGCAGCGGAGTGACTTCCTGTTCACACATTTATCAACAACCTAATTCAAGATTGACACTTGgctcttaaaaataaaaaaagggccATGCCTACATTGGGACTAACCAATAGTGGCAGATTTGAATTTGTTGTCGCTCTGCTGTGTACGATGATATCATATTGCACCTTTTTAAAGGATGTAATCTTGCTGTTGGGAGTTGAAATGCATGGTGTTCAGATGTGACCACCTGACACAGGACAGAGGTCAGAGTTGAATAGGAAAGAAAGAGCGTTGTTACAGCACTTCCCCAGAACTGATTGCTTTCATTTAGTTTATTTTGTGGATGATTTCACCTTGATAGACTGTAATAATGATGTAGAATCTTTCTCCCTTAATACCTTCCCTTTTTGTACGCTAAACCCTCAACCCAGACAATTTGAAAATGCACCGAACATTTGtttagagagaaaaaaagaaactgaaaacaaacaaaactatagtttgcatATAACAAGTTGTTTTGTTAGGTCAATGATTTCTTACTTCTCACTGAGCCACTCAATTGATAcgtttttgtaaaaaataaataaaaagagcctgtcctaaatgacaccctattcctgatttgtagtgcactatatagggaatatgttgccatttgggatgccaccAGTGTCTCCAACGTACAAGTTGTTGACCTGTCTCACTACTAGCAAGGAGACGCAATGGCTGAGGGCATCTGAGCTAGTTTGACCGTTGAAATATACTTCTGGCTTTAGAAGATGGCTAAATAGAACTAAAGTCCAACTACCTAATCATACCATACAAATGTAGCCTCATGAGATTCTGCAAAGAtgagagagaagtgtgtgtgtgtgtgtcgagtttGTGTCTGACTGACTCTATGCCATCGATTTGAAAGTGACCGAAGCACAGTAGCTATGAAAAAGCGAGAGACTTATTCTCAAGTAGCACTGTGGTTGTCCTCATTTTTGtccaacacacagagacaattgTCCTCTTCGGGGTATAGAGTCTTTAACTGCATTGTGTTTACATCACAAGATAAATCAGTATTCAGTTATCACCATAGGTAATTATCTCTACAGTCTACTGCATTTAGTTTTTTAACAATCGTTCTGGGGTATctaatgtatttctgtatttaattttctgtCGGTGTAAATTGAATTTATATACAAGAGGGCGCTCTATATTGACTTTAGTTAAATGTCATAATAATGATATGATAGACACAATGGATTAAAAGAAGTCAAAAATATTATGTAACACAGCGGGCTGGGCCCTCTTGCATTCGCATTGTTATGAGAACTAATGttgtgtcccaaaaggcaccctgttccctacccTGTAAGCAACTTTttgttccctatgggccctggtcaaaagtagtgcactatatagggaatggggtgccatttaggacagaaCCTAAGATGGATGTGCTTTGTACAgagtttaaaataaaataaaaaatgtttttagaggGGTGCATTTTACCCAACTCACTACTAACTAGACCATTACCATTAGGCTTGGTCCTGGCCTTGCTTCAGAAGCACAGCTAAACAGTAACTATCATTTCCATTTGATATATATTTTACATGCATCCCCAATGGATTGTTCTCAGACATAAAAGGATAGTTCAGCGATTTTTACATTTTGAGAGATATACAATGGCTCAACTTTCCCTTTTAATGAAGAAGGCGATGAAGTGTAGAAGTGGCGCTCTTTTGCAATGTCAACAAGTTATTTTGGATGGGTGATATAATGCCAGATCAATTGTTTCCAATTATGCTTTgtagttgaatatttatttacaaaCACCCTTATCTACAAGCGTGGGACCTGGACATTACACCTTGTCCTAGCTAGGTCCCATCTTGTTAATGATTTCACAAAATGGTTCTTAATATTATGTGTGCCTGGGATAAACATGCCATGTTTTCAGTTTAAAGTTATTAGGCTACACCTGACAAATCATAGTTTAAAGAAGAAATGTTATCTTTTTATGGCTTTTTTTATTCTTCAGAAACCTGTATGGCAGTGAGTGTATGTATGACCATTGCATACCATGTTGCCAACAATGATACAGTGTGATTGAGACGTTTATTTTGTTGTTGCATGAAACGAGACACTGTTCTCCTACCTCATGTTGtgatataaaatgttttttttaagcaGAGGACACTGCGTCTTTAATCGTGGATCATAATTGATATTTACTAGTAAATGACGACGACCTGTACTTGCTTTTAGCGAATACCTCAGTTGTATATCTCGTGTTGTGTTTTTCCTCCCGCCCTTATTTCACATCTTGTAAATATACACTGTATAAACAATGAACTTGGATCACGTTCAAGTAAAGTTCTGTAGTGTCACAA

Function

NR:

description
ski-like protein

GO: NA

KEGG:

id description
K18499 SKIL; Ski-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965927.1 True 7346 mRNA 0.47 8 1125824 1160925

Neighbor

gene id symbol gene type direction distance location
prkci LOC106600503 coding upstream 18226 1036522 ~ 1107598 (+)
LOC110508316 LOC106600506 coding upstream 121533 996942 ~ 1004291 (+)
LOC110508203 LOC106600526 coding upstream 139232 984456 ~ 986592 (+)
LOC110508314 LOC106600507 coding upstream 141632 970023 ~ 984192 (+)
LOC110508313 lsm7 coding upstream 171490 947539 ~ 954335 (+)
LOC110509189 LOC106600499 coding downstream 83043 1243968 ~ 1317532 (+)
LOC110508321 LOC106600497 coding downstream 241802 1402727 ~ 1414817 (+)
LOC110508331 LOC106600487 coding downstream 630794 1791719 ~ 1798195 (+)
LOC110508332 LOC106600484 coding downstream 642869 1803794 ~ 1836904 (+)
LOC110508334 LOC106600477 coding downstream 687590 1848515 ~ 1918387 (+)
G2093500 NA non-coding upstream 10829 1114699 ~ 1114995 (+)
G2093378 NA non-coding upstream 95030 1030375 ~ 1030794 (+)
G2093365 NA non-coding upstream 108064 1017533 ~ 1017760 (+)
G2093363 NA non-coding upstream 109282 1016076 ~ 1016542 (+)
G2093326 NA non-coding upstream 159576 966011 ~ 966248 (+)
G2093631 NA non-coding downstream 60906 1221831 ~ 1222188 (+)
G2093640 NA non-coding downstream 68563 1229488 ~ 1229698 (+)
G2093644 NA non-coding downstream 70027 1230952 ~ 1231152 (+)
G2093645 NA non-coding downstream 70468 1231393 ~ 1231680 (+)
G2093646 NA non-coding downstream 70853 1231778 ~ 1232032 (+)
G2092558 NA other upstream 431166 694133 ~ 694658 (+)
G2093889 NA other downstream 283708 1444633 ~ 1446121 (+)
G2093960 mpz other downstream 523181 1684106 ~ 1696486 (+)
LOC110509192 LOC106600604 other downstream 933219 2094076 ~ 2190557 (+)
G2094884 NA other downstream 1492938 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1739925 2900784 ~ 2969598 (+)

Expression


Co-expression Network