LOC110509189 (LOC106600499)


Basic Information

Item Value
gene id LOC110509189
gene name LOC106600499
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1243968 ~ 1317532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966849.1
gTGTATGCCTGGAAAGTGTGATGTTCTTAGTCCTGTGTGGAATGACAGAGAGAGCAGCTCATGGAGTCGCAGAAAACCCCCTAAAGTGCTTTATCCAACTGCCTTTCTCCCTACTACTTTTTCTGCAAACCTATATCTATTCcactcactcctctttctatctctatcttcCTCTTCTTAGTTATTTTTCTCTCTTGAATCACTTTTCAGTCCCTCCCTTCTCTGCCCGTCTCTTTGTTTCCGTCTTTCACCCAACCCTCTCCTGCCGTCCAGTCTGTTACCTCTCTACTGGCTCTATATGGTTGACTGAGTGACCGACCAGGGACTCTGGGACCAGTGGAGTGAGTGTCCGTGTCCGGGACTGTGGAGGACTTTCCGGGAGAGTCAGGATGGCGGTGAACTTTGCGGAGGTGCGGGGTCGGGTGAAGAATGTGTGTGCGCAGAACGGGCTCCTCATCCTGTCTGTGTTGGCTGTGGTCATTGGCTGTATGATGGGGTTCCACCTGCGGGGCAAGCAGCTCTCCGACCAGGAGGTGAAGTACTTCCAGTTTCCTGGAGAGCTCCTGATGAGGATGTTGAAGATGCTCATTCTGCCCCTCGTCGTCTCCAGtttgaTGTCGGGGCTAGCAGCCTTGGATGCCAAGTGTTCCAGCCGCCTGGGCATCATGACCGTCTCCTACTACCTGTGGACCACCTTTGTGGCGGTGGTGGTGGGCATCCTCATGGTTACCATCATCCACCCAGGGGGCGCCGCCCAGAAGGAGGACAACGAGGACAGCGGCAAGCCAATCATGAGCTCCGCTGACGCCCTGCTTGATCTGATTCGAAACATGTTCCCAGCCAACTTGGTCCAAGCAACTTTCCAACAGTACCGTACCAGGAGTATCCCCATCATGAAGGCCCCCCCACCCACGGTGGCAGCCTCCCTGATGGAGAGCACCACCCGGAGGGTCTATATCTACGGTGTCCAGGACGACAACGGCACCGACATCCAGAACTTCTCCCTGGACTTGACACCTCCGCCTGACATCCAGATGCGCACACTGCCCGGGACCAGCGATGGCATGAACGTCCTGGGGATCGTCATCTTTTCCGCCACCATGGGTATCATGCTGGGAAGAATGGGGCCTAATGGCAGCGCCTTGGTCAACTTCTGTCAGAGTCTGAACGAGGCTGTCCTGAAGATTGTCGCCATAGTGATCTGGTACTTCCCTTTCGGCATTGTGTTCCTGGTTGCCGGTAAGATCCTGGAGATGGACGACCCGTCGGCCATGGGGAAGAAGTTGGGGTTCTACGCTATCACCGTGGTGATGGGACTGGTGCTGCACGGTCTCTTCATCCTACCAGCCATGTACTTCTTCATCACCAAGAAGAGTCCCATCGTCTACATCAGGGGCATCCTGCAGGCCCTGCTCATCTCCCTGGCAACCTCGTCCAGCTCTGCCACACTGCCTATAACCTTCAAGTGCCTCCTGGAGAACAACCACATCGACCGACGCATCATCCGCTTCGTACTCCCCGTGGGCGCCACCATCAACATGGACGGGACGGCACTCTATGAGGCAGTGGCGGCCATCTTCATCGCCCAGGTTAACAACTACGAGTTGGACTTTGGCCAGATCATCACTATCAGTATCACAGCCACAGCTGCCAGTATTGGTGCAGCTGGAATTCCGCAGGCAGGACTGGTCACCATGGTGATCGTGCTAACCTCAGTGGGCCTGCCCACTGATGACATCACACTCATCATTGCTGTGGATTGGGCGTTAGACCGTTTCAGGACAATGGTCAACGTGATGGGAGACGCTTTGGCCACGGGGATCATGGCTCACATCTGTAGAAAAGATTTTGTCAAGGAGGGAGAGCAGGTACCTTTGATCTGCGAGACCAAGCCCATGGTCAGCATCCAGCAGATGACGTACCAGAAGAACGGTGGGTACCAGCCCCCTCCCTGCGGACCGGGGGGCCCGGACGTGGCTCGTCTGATGCAGCTGGAGGAGGGGGTACGGCCTGAGCAGAGGAAGAGGAACCCCCACGCTCCCCAACACAAGAGGGAGCACAAGGACAAGGACCACTGCTCCATCGACATGAATGGCCTGGAGACCAACGTATAGACATAGTTATCATTGAGCTGCATCCTGATTCGTCACACTTCTCCCAAAGAGTGCATTTGCACACTCCCCATCATGAATCTAAGAATGGTGGATCTAACAACTCCCTCCAGCCAATTCTTAGCCTACACCAATCCTACGCTTTTAAGTCCATGATGAGAAGTGGGAAAATGCATACTTTGGAAAAAGTGTGGAGTAACTGAATGCAGCCAGTATCATAgctacaggggagagagggagagaggaaggactgACTAACTGCACCAGAGCTCGGGATGACCAACCCGACCCTAGCTGGCACATTATGGTCCACTGTGGATGCAATTCAGAGGATGTGTAAAGAAAATAGGATTTTCTACATTACGTATATTACGACCCACTATGATTGTGTATATTTTTGTGTATATATTTACAAGACTTATTATACTATGCACCAGCAGCAGAGTGATATGGTGGGAGACATTCTGTACATTGAGACATTCTATATGATGAGACATTCTATATGAAGTGCTAACATTCTATTTATTGAGGAGACATTCTCTATGATGAGGAGACATTTCATACAATGAGAAGACATTTtgcacagtttattaggtacaccaccacgTTCAATGGTTTGCTCCTACAGCTAGTAAATCaggtggccgtggcttgctatataaagcaggcagacaggcatcgaggcaatCAGTTACTGTGACCTAAACGACTGAGCGTAATATGATTgtcggtgccaggcgcaccggctccagtatctcagaaatggaTGAACTCCTAGGCTTTTCACAcacaacagtgtctagggtttacccagaatggtgcaacaaacaaaaaaacatccagtcGATGGCAGGCAGTCCAATGGACGAAAACATcttgttgatgagaggtcgaaggagaatggcaagaatcgtgcaagctaacagacGGGCCACCAACAGGCAACTAACGGTGTAGCGCAACAGTAGTGTGCAGAAcagcatctcggaacgcacaactcgtcagtCCTTGCCACAGATGGGCTGTTGCAGCAGACGaacacaccgggttccactcatatcagctaaaaacaagaagggTCTCCAGTGGGCAtgccatcaccaacactggacaattgaggagtggaaaaacagtgcctggtctgatgaatcccggttcctgttgagTAATGCTGATGGCAAAGTCAGGATTTGAGCAGCATgagtccaaatcaaatcaaatcacatttgattggtcacatacacgtgtttagcagatgttattgcggttgtagtgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaagtaatatctaagaaTTACACAACACATACCCAATGCACGCAAATCTAGTAAAGGAATTaagaatataaaaatatatggacAAGCAATGTCCATGGcctcatcctgcctggtgtcagtTGTGCAAGCTGGTGGCAGTGGTATAATAGtgtggaatgttttcctggcacacgttatgTCCCTTCATACCAATTGACCAACATTTCCATGAACTCAGGCTGTTCTGGAGTCAAAGGGGGGTCCGACCCGGtcctagatgggtgtacctaataaactgacagGTGTACCTAGTATATGACAAGTATCAGGAGACAGAAGGGATAATGAAGAACTGTGGGAAACTTCAGAGAGGGCTTGGGGATCTGTGGACCTGTGGATGATGACAGGACATCTAAGCTTGAGCTTTGGCCTTCCATCTTCACCTTAGTTAatcaactcccccccccctcacagTGGATGTGtgagtctgtccgtctgtctgtctgtcgagctGAGAGGTGAATGTGACGAACACTCTCCTTACATAGACAATGCTTGTGGACTATGGACAAACAGGAAGTGcgcatttctttaaaaaaaaagatattaTAAACTAAATGTTCCCTCTAATCCCCCACATGGGGTTACGGATATTTCAGGCTAATTGGTTAGGCTTATATACTAAGCAGGTTACTCTCACAATCATCATTGGAGGTTATTTGTAAAACTTTACAGCTAAGGTAAAATCTAGAATCCGTTTTTTTAATCTCCACATGTGAAACAAAGGTATACATAGGCTATCTAACGTTTTATATCATTGAGAAACTGGTCGGTACATTTACACTGGCTGTTAAGTTTTCTGAAGACCTCTTTTATCAATATCTAGAATGGCTTTTCAAGACATTCGTGTTCACATCTAACAGAGAAGGGATCTACAGAGCTCAAATacactctactctgctcttcttcCTCAGCAAACGGACCCATATTGCTTCTCTCACTGATTTCAACCTTTTGATACCTTTTCTCCTTAAAATGTCCTTCCCATGATCTTCTTTGCCTTTTTATCCCCTTAAACAAGGTAGTACACACCTGCCTCATATATGGTGACTGGCATGATGGAAACAATTTCTGTGTACCAAACAgcatcctattctctatacagcgcactatatacagtagggaataGGATTTGGGGGAAACACAATGACAGAGACAGGTATGTGTAAGAGCCATACTGCTCTGGGAGGTGTTAACAGTTGTTGAAACATTTCTGGAGTGTCAAGTTCTTGCACCAACCCTAGTCCCTCTTTGCCTTAAAGTACAAAGGAGAAGCATGTGGGGAGATAGAGTATGGGTACACCACAAAACATATGGGGGTACACCTAATACATTCAAGGCAAAAGCAGCAAGCTGCAATAAAACAACCACAGGCCATACTCTGAACTTTGCTtcgtatgtatatatatttattttaaaagtGAAAAATCTTTTGCAGTTTGTATAAACATAGAGTATGACTCAACAGGCACCATTCTATCTTTGTTATGAAATGAACAATTATTAATTGTTTCATCTATTCCAATTGCACTAGatgtttttctgtttttctgtatAAAAAAAAGgcaaaaaatgaaaatatattggAAGGAAACACAAATACACATTTTATT
>XM_036966850.1
gTGTATGCCTGGAAAGTGTGATGTTCTTAGTCCTGTGTGGAATGACAGAGAGAGCAGCTCATGGAGTCGCAGAAAACCCCCTAAAGTGCTTTATCCAACTGCCTTTCTCCCTACTACTTTTTCTGCAAACCTATATCTATTCcactcactcctctttctatctctatcttcCTCTTCTTAGTTATTTTTCTCTCTTGAATCACTTTTCAGTCCCTCCCTTCTCTGCCCGTCTCTTTGTTTCCGTCTTTCACCCAACCCTCTCCTGCCGTCCAGTCTGTTACCTCTCTACTGGCTCTATATGGTTGACTGAGTGACCGACCAGGGACTCTGGGACCAGTGGAGTGAGTGTCCGTGTCCGGGACTGTGGAGGACTTTCCGGGAGAGTCAGGATGGCGGTGAACTTTGCGGAGGTGCGGGGTCGGGTGAAGAATGTGTGTGCGCAGAACGGGCTCCTCATCCTGTCTGTGTTGGCTGTGGTCATTGGCTGTATGATGGGGTTCCACCTGCGGGGCAAGCAGCTCTCCGACCAGGAGGTGAAGTACTTCCAGTTTCCTGGAGAGCTCCTGATGAGGATGTTGAAGATGCTCATTCTGCCCCTCGTCGTCTCCAGtttgaTGTCGGGGCTAGCAGCCTTGGATGCCAAGTGTTCCAGCCGCCTGGGCATCATGACCGTCTCCTACTACCTGTGGACCACCTTTGTGGCGGTGGTGGTGGGCATCCTCATGGTTACCATCATCCACCCAGGGGGCGCCGCCCAGAAGGAGGACAACGAGGACAGCGGCAAGCCAATCATGAGCTCCGCTGACGCCCTGCTTGATCTGATTCGAAACATGTTCCCAGCCAACTTGGTCCAAGCAACTTTCCAACAGTACCGTACCAGGAGTATCCCCATCATGAAGGCCCCCCCACCCACGGTGGCAGCCTCCCTGATGGAGAGCACCACCCGGAGGGTCTATATCTACGGTGTCCAGGACGACAACGGCACCGACATCCAGAACTTCTCCCTGGACTTGACACCTCCGCCTGACATCCAGATGCGCACACTGCCCGGGACCAGCGATGGCATGAACGTCCTGGGGATCGTCATCTTTTCCGCCACCATGGGTATCATGCTGGGAAGAATGGGGCCTAATGGCAGCGCCTTGGTCAACTTCTGTCAGAGTCTGAACGAGGCTGTCCTGAAGATTGTCGCCATAGTGATCTGGTACTTCCCTTTCGGCATTGTGTTCCTGGTTGCCGGTAAGATCCTGGAGATGGACGACCCGTCGGCCATGGGGAAGAAGTTGGGGTTCTACGCTATCACCGTGGTGATGGGACTGGTGCTGCACGGTCTCTTCATCCTACCAGCCATGTACTTCTTCATCACCAAGAAGAGTCCCATCGTCTACATCAGGGGCATCCTGCAGGCCCTGCTCATCTCCCTGGCAACCTCGTCCAGCTCTGCCACACTGCCTATAACCTTCAAGTGCCTCCTGGAGAACAACCACATCGACCGACGCATCATCCGCTTCGTACTCCCCGTGGGCGCCACCATCAACATGGACGGGACGGCACTCTATGAGGCAGTGGCGGCCATCTTCATCGCCCAGGTTAACAACTACGAGTTGGACTTTGGCCAGATCATCACTATCAGTATCACAGCCACAGCTGCCAGTATTGGTGCAGCTGGAATTCCGCAGGCAGGACTGGTCACCATGGTGATCGTGCTAACCTCAGTGGGCCTGCCCACTGATGACATCACACTCATCATTGCTGTGGATTGGGCGTTAGACCGTTTCAGGACAATGGTCAACGTGATGGGAGACGCTTTGGCCACGGGGATCATGGCTCACATCTGTAGAAAAGATTTTGTCAAGGAGGGAGAGCAGCTCAGAGTACCTTTGATCTGCGAGACCAAGCCCATGGTCAGCATCCAGCAGATGACGTACCAGAAGAACGGTGGGTACCAGCCCCCTCCCTGCGGACCGGGGGGCCCGGACGTGGCTCGTCTGATGCAGCTGGAGGAGGGGGTACGGCCTGAGCAGAGGAAGAGGAACCCCCACGCTCCCCAACACAAGAGGGAGCACAAGGACAAGGACCACTGCTCCATCGACATGAATGGCCTGGAGACCAACGTATAGACATAGTTATCATTGAGCTGCATCCTGATTCGTCACACTTCTCCCAAAGAGTGCATTTGCACACTCCCCATCATGAATCTAAGAATGGTGGATCTAACAACTCCCTCCAGCCAATTCTTAGCCTACACCAATCCTACGCTTTTAAGTCCATGATGAGAAGTGGGAAAATGCATACTTTGGAAAAAGTGTGGAGTAACTGAATGCAGCCAGTATCATAgctacaggggagagagggagagaggaaggactgACTAACTGCACCAGAGCTCGGGATGACCAACCCGACCCTAGCTGGCACATTATGGTCCACTGTGGATGCAATTCAGAGGATGTGTAAAGAAAATAGGATTTTCTACATTACGTATATTACGACCCACTATGATTGTGTATATTTTTGTGTATATATTTACAAGACTTATTATACTATGCACCAGCAGCAGAGTGATATGGTGGGAGACATTCTGTACATTGAGACATTCTATATGATGAGACATTCTATATGAAGTGCTAACATTCTATTTATTGAGGAGACATTCTCTATGATGAGGAGACATTTCATACAATGAGAAGACATTTtgcacagtttattaggtacaccaccacgTTCAATGGTTTGCTCCTACAGCTAGTAAATCaggtggccgtggcttgctatataaagcaggcagacaggcatcgaggcaatCAGTTACTGTGACCTAAACGACTGAGCGTAATATGATTgtcggtgccaggcgcaccggctccagtatctcagaaatggaTGAACTCCTAGGCTTTTCACAcacaacagtgtctagggtttacccagaatggtgcaacaaacaaaaaaacatccagtcGATGGCAGGCAGTCCAATGGACGAAAACATcttgttgatgagaggtcgaaggagaatggcaagaatcgtgcaagctaacagacGGGCCACCAACAGGCAACTAACGGTGTAGCGCAACAGTAGTGTGCAGAAcagcatctcggaacgcacaactcgtcagtCCTTGCCACAGATGGGCTGTTGCAGCAGACGaacacaccgggttccactcatatcagctaaaaacaagaagggTCTCCAGTGGGCAtgccatcaccaacactggacaattgaggagtggaaaaacagtgcctggtctgatgaatcccggttcctgttgagTAATGCTGATGGCAAAGTCAGGATTTGAGCAGCATgagtccaaatcaaatcaaatcacatttgattggtcacatacacgtgtttagcagatgttattgcggttgtagtgaaatgcttgtgcttctagctccaacagtgcagtaacatctaacaagtaatatctaagaaTTACACAACACATACCCAATGCACGCAAATCTAGTAAAGGAATTaagaatataaaaatatatggacAAGCAATGTCCATGGcctcatcctgcctggtgtcagtTGTGCAAGCTGGTGGCAGTGGTATAATAGtgtggaatgttttcctggcacacgttatgTCCCTTCATACCAATTGACCAACATTTCCATGAACTCAGGCTGTTCTGGAGTCAAAGGGGGGTCCGACCCGGtcctagatgggtgtacctaataaactgacagGTGTACCTAGTATATGACAAGTATCAGGAGACAGAAGGGATAATGAAGAACTGTGGGAAACTTCAGAGAGGGCTTGGGGATCTGTGGACCTGTGGATGATGACAGGACATCTAAGCTTGAGCTTTGGCCTTCCATCTTCACCTTAGTTAatcaactcccccccccctcacagTGGATGTGtgagtctgtccgtctgtctgtctgtcgagctGAGAGGTGAATGTGACGAACACTCTCCTTACATAGACAATGCTTGTGGACTATGGACAAACAGGAAGTGcgcatttctttaaaaaaaaagatattaTAAACTAAATGTTCCCTCTAATCCCCCACATGGGGTTACGGATATTTCAGGCTAATTGGTTAGGCTTATATACTAAGCAGGTTACTCTCACAATCATCATTGGAGGTTATTTGTAAAACTTTACAGCTAAGGTAAAATCTAGAATCCGTTTTTTTAATCTCCACATGTGAAACAAAGGTATACATAGGCTATCTAACGTTTTATATCATTGAGAAACTGGTCGGTACATTTACACTGGCTGTTAAGTTTTCTGAAGACCTCTTTTATCAATATCTAGAATGGCTTTTCAAGACATTCGTGTTCACATCTAACAGAGAAGGGATCTACAGAGCTCAAATacactctactctgctcttcttcCTCAGCAAACGGACCCATATTGCTTCTCTCACTGATTTCAACCTTTTGATACCTTTTCTCCTTAAAATGTCCTTCCCATGATCTTCTTTGCCTTTTTATCCCCTTAAACAAGGTAGTACACACCTGCCTCATATATGGTGACTGGCATGATGGAAACAATTTCTGTGTACCAAACAgcatcctattctctatacagcgcactatatacagtagggaataGGATTTGGGGGAAACACAATGACAGAGACAGGTATGTGTAAGAGCCATACTGCTCTGGGAGGTGTTAACAGTTGTTGAAACATTTCTGGAGTGTCAAGTTCTTGCACCAACCCTAGTCCCTCTTTGCCTTAAAGTACAAAGGAGAAGCATGTGGGGAGATAGAGTATGGGTACACCACAAAACATATGGGGGTACACCTAATACATTCAAGGCAAAAGCAGCAAGCTGCAATAAAACAACCACAGGCCATACTCTGAACTTTGCTtcgtatgtatatatatttattttaaaagtGAAAAATCTTTTGCAGTTTGTATAAACATAGAGTATGACTCAACAGGCACCATTCTATCTTTGTTATGAAATGAACAATTATTAATTGTTTCATCTATTCCAATTGCACTAGatgtttttctgtttttctgtatAAAAAAAAGgcaaaaaatgaaaatatattggAAGGAAACACAAATACACATTTTATT

Function

NR:

description
excitatory amino acid transporter 5-like

GO: NA

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966849.1 False 5080 mRNA 0.48 11 1243968 1317532
XM_036966850.1 True 5086 mRNA 0.48 12 1243968 1317532

Neighbor

gene id symbol gene type direction distance location
LOC110509188 LOC106600502 coding upstream 83043 1125824 ~ 1160925 (+)
prkci LOC106600503 coding upstream 136370 1036522 ~ 1107598 (+)
LOC110508316 LOC106600506 coding upstream 239677 996942 ~ 1004291 (+)
LOC110508203 LOC106600526 coding upstream 257376 984456 ~ 986592 (+)
LOC110508314 LOC106600507 coding upstream 259776 970023 ~ 984192 (+)
LOC110508321 LOC106600497 coding downstream 85195 1402727 ~ 1414817 (+)
LOC110508331 LOC106600487 coding downstream 474187 1791719 ~ 1798195 (+)
LOC110508332 LOC106600484 coding downstream 486262 1803794 ~ 1836904 (+)
LOC110508334 LOC106600477 coding downstream 530983 1848515 ~ 1918387 (+)
LOC110509192 LOC106600604 coding downstream 776544 2094076 ~ 2190557 (+)
G2093646 NA non-coding upstream 11936 1231778 ~ 1232032 (+)
G2093645 NA non-coding upstream 12288 1231393 ~ 1231680 (+)
G2093644 NA non-coding upstream 12816 1230952 ~ 1231152 (+)
G2093640 NA non-coding upstream 14270 1229488 ~ 1229698 (+)
G2093631 NA non-coding upstream 21780 1221831 ~ 1222188 (+)
G2093826 NA non-coding downstream 41050 1358582 ~ 1358870 (+)
G2093830 NA non-coding downstream 43017 1360549 ~ 1360789 (+)
G2093838 NA non-coding downstream 46591 1364123 ~ 1364605 (+)
G2093880 NA non-coding downstream 110239 1427771 ~ 1487137 (+)
G2093938 NA non-coding downstream 207714 1525246 ~ 1525596 (+)
G2092558 NA other upstream 549310 694133 ~ 694658 (+)
G2093889 NA other downstream 127101 1444633 ~ 1446121 (+)
G2093960 mpz other downstream 366574 1684106 ~ 1696486 (+)
G2094884 NA other downstream 1336331 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1583318 2900784 ~ 2969598 (+)

Expression


Co-expression Network