LOC110508331 (LOC106600487)


Basic Information

Item Value
gene id LOC110508331
gene name LOC106600487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1791719 ~ 1798195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588774.2
AACTACCGTAAgtgtaatattttattttatttctcaaGATGTCGGTGTACGGACCAGTGGTGAAAATTCACCCTGTCGTTCTCGCCTCCATCGGTGACTCATACGAACGGAGAAATGAGGGAGCGAGTCGTGTGATTGGAACCTTGCTTGGTACCATTGACAAGCACTCTGTTGAGGTCACCAACTGTTTCTCTGTCCCCCACAATGAGTCTGAAGATGAGGTTGCTGTTGACATGGAGTTTGCCAAGAACATGTATGAGCTCCATAAGAGGGTGTCACCCAGCGAGGTCATCGTCGGATGgtatgccactggctttgagatTACGGAACACTCTGTGCTGATCCATGAGTATTACAGCCGAGAGGCCACAAACCCCATTCACCTGACCATGGACACGGCCCTGCAGAGTGGCAAGATGAACATCCGCGCCTACCTCAGTGCCCAGATGGGTGTGCTGGGAAAGACAGTCGGTGTGAtgttcacccctctgagtgtgaAATACAAGTATTACGACACCGAGAGGATAGGCATTGATCTTCTCGAGAGGACGAGAGATGCTCCTAACACCACCAATggactgacctctgacctctgccaGGTTGGCGGGGCTGCTGGCCGGGTTCAGGACATGCTGGCCACGGTACTGACCTACATAGAGGATGTGTTGTCTGGTAAACAGACAGCCGATAACAGTGTTGGACGTTACCTGATGGATCTGGTCAACAAAGTTCCTAAGATCACAGCAGAGGACTTTGAGACCATGCTCAACTCCAACATCAACGACCTGTTGATGGTGACCTATCTATCGAATCTGACTCAAGCACAGATCGCCTTGAACGAAAAAATCGTGGTACTCTGAGCATTGGGGGATTGGGTTTGTTTATTTCTTTTCTTTTTTGGAGTTGTATTTCATTTTTTGTGTATATTCTTAAGCTCAAATTAATAAAGGTGTTTTAACAGTA

Function

NR:

description
eukaryotic translation initiation factor 3 subunit F-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03249 EIF3F; translation initiation factor 3 subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588774.2 True 963 mRNA 0.48 8 1791719 1798195

Neighbor

gene id symbol gene type direction distance location
LOC110508321 LOC106600497 coding upstream 376902 1402727 ~ 1414817 (+)
LOC110509189 LOC106600499 coding upstream 474187 1243968 ~ 1317532 (+)
LOC110509188 LOC106600502 coding upstream 630794 1125824 ~ 1160925 (+)
prkci LOC106600503 coding upstream 684121 1036522 ~ 1107598 (+)
LOC110508316 LOC106600506 coding upstream 787428 996942 ~ 1004291 (+)
LOC110508332 LOC106600484 coding downstream 5599 1803794 ~ 1836904 (+)
LOC110508334 LOC106600477 coding downstream 50320 1848515 ~ 1918387 (+)
LOC110509192 LOC106600604 coding downstream 295881 2094076 ~ 2190557 (+)
LOC110508337 scg2 coding downstream 661437 2459632 ~ 2464135 (+)
LOC110508340 LOC106600596 coding downstream 679563 2477758 ~ 2483196 (+)
G2093960 mpz non-coding upstream 95233 1684106 ~ 1696486 (+)
G2094032 NA non-coding upstream 126603 1662990 ~ 1665116 (+)
G2094029 NA non-coding upstream 131967 1657301 ~ 1659752 (+)
G2094023 LOC106600492 non-coding upstream 142222 1648055 ~ 1649497 (+)
G2093947 NA non-coding upstream 256465 1535037 ~ 1535254 (+)
G2094519 NA non-coding downstream 177931 1976126 ~ 1976332 (+)
G2094523 NA non-coding downstream 179164 1977359 ~ 1977571 (+)
G2094595 NA non-coding downstream 278549 2076744 ~ 2077032 (+)
G2094599 NA non-coding downstream 286786 2084981 ~ 2085229 (+)
G2094624 NA non-coding downstream 406591 2204786 ~ 2207029 (+)
G2093889 NA other upstream 345598 1444633 ~ 1446121 (+)
G2092558 NA other upstream 1097061 694133 ~ 694658 (+)
G2094884 NA other downstream 855668 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1102655 2900784 ~ 2969598 (+)
G2095895 LOC106600579 other downstream 1542989 3341184 ~ 3341519 (+)
G2096475 NA other downstream 2089185 3887380 ~ 3907871 (+)

Expression


Co-expression Network