LOC110508332 (LOC106600484)


Basic Information

Item Value
gene id LOC110508332
gene name LOC106600484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 1803794 ~ 1836904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588775.2
GAAGAACACACTCCACCCTGGCAACGCGTCCTCCCCTATCGTTATAGGCATGCTCAGCAGAAGGGGAACTGCAACCGCCGCGCCGAACATCTTCCAGGGATGGCTTCTGCTGAGCCGTTGTGCTCCAGTTTCTACCACCAGCACTGCGCTTAAGGAACAAAATAAACACCTTCGCCCTCCTGCTGccaagacagacacacaccaccatgTACAGCGTGGAGGACCTCCTCATTTCTCACGGATACAAACTTCCCAAGACAAGCATCCCCTGCCCCTCTTCAACTTCATCCGCCACCGCGCCTTACGAGAAGCAGCGCCACGCCGCCGCCGATTGCCACCGTGAAATCCCAGCAGCAGAGAACCAGAGATCTGGTCGTGGTGGATCACTGAACGGGAATGAACAGGCGGGAGACAGAGGGGCCTGCGTCTTCAGCAGCAGCAGGCAGGCACTACTGGCGAAGGGCTACCCCGGCAGCTGCGACAATGAGAGCGGCGGGGAAAGGAACCAAAGGAGAAAAGAAGCTGTCAGCGGTAACCTAGGTGACAGCCTCGCACAGCCCCTGGGCGATTCTCTCGCCACGGATAGcggGTTCTATGACGCGCCCAGCTTAACCTATTCTGAGCAGGTCGAGAGAAGAGAGCAGTTGGATGAGAGGGATGTCTTCtactggaggaggagaggccaggACTTCAGTGTCCTCCTGGATTACGCCGACGGCCGGGAGCTGAGAGCATCCGCTGGCTTTCTGAAGGCCTCTGAGGCGGCATGGCGACCACAGGCCCTGATCGCAGAGGAccataggggagagagggagaagctgCAGCAACAGAAGCAGCTATGGGAAGACACCTCCATCTCCTGGCTGAGAGAGGCCGATGCGGCTCCTAGACAGTTAAGGGTAGTGACTGGGGTGACTGGGGAGCGGAAGTGCCAGAGCCTGGGCACAGAGGAGTGGAAGCCTGCGGTGGGGCTGGGGAGGCAGCTGTCGGATGGGGAGGGCGAGAGGTGGGCTCAGGAGCGGCAGCACCGCCTGAGGACTCAAGAGAGCACTGGTTCTATCCTCCCCAGAACCAGAAGGATGTCCCAGTCCCTCCCCAGAGTGTTGTCACCTGCTGGAGCTACTGAACACGCAAACACACTGTCCAGTTTGGTCAGTTTCCAGCTTCGACCAGGCCAGGTTGATAGACAGAGAGTGAACAGCACCGTATTTTCCGGGCCTTATAGTCGGTATTACCACAGTGCCGCAGTCAGCAGGGACCGGTGGGCCAGAAACAGTTGGCAAAGCGTCGGACATGTTGCACTTTTACCAAAGCCCAGGTTCAGCAGGCCTGTCAAGCCTCCATCATACGAAATACACCAGCAGACTAGGGGTAGCCAGGAGATGCTCGCTGTAGCTGTAATAGATCAGCAGGGAGGGTCCAAACAACCGAAAGACAACAGGCCTGTCTATTACCCACGGGGTGGAGAATTGCAAAGACAAGACTATTTTGCACAACACTCTGCTATCTTTGGCATGGAGCCCCCCGGTTATATCCCACCCCCGTCTTATAAGAGAGCCCTGCCCCCAATCAGGGGAGGACCAATGAACCGCAACGAAGTGGCAAACTATAAGTGGAGGGGGGAGGTGAAGATACAGATGCACATGCCTATGAGCTCAGAGGCGGGAAAGTGGTTTTCCGGACAGACAGGAGGGTCGTGGCTGGAACACTACGGGGATCAGGGTATACCCTACAGGAAACAGGTTAAcgctaacccaaaccttaaccctggaTACACCGAGGAGCATCTGGGTCATGTTCACTATTTACCCTTTGATGATCCGCGAGTGAGACAAATCTCAGGAGGGCCTGGCGGAAATTCTCTTACTGCCACTGACAAGTTTATCCGAAACATGAAGAAAGAGACTCCCTGCGCTAAGGTTTTAGGACAATCTACACACGATAGTGCCTTCCCCCCCCCACAGGGGCTCTCTCTCAATAACGACTGCCGCAAGACATCTCTCAATGACAACAACGGTGGTAGTAGTACTAGATGGTGCAACAGGGGTTTAATAAACAAAGGAAGTGTAGACAGTGTAGCTCCTGATCAGAGCTGTGGTATCTATCCAACAGCTTTTCACATTAGACCTCCTCAGCAACTGATCAGGCATCTGGACCAAGGTCAAGGTGTGTCAGAAACTGTAACTCAAGTGAAAACGTCAGTCAATGAGCCTGActccacagagaaagagaaaccaAGAAAAACTGACTCAGAGAAACCAgaaaaaaatgagaaaaagagTGTAAAACAAAAACTTAGCGAGACAATATTCTGTTTGGTGTCTGTTCATGTCCCTCTAACGCCGGGTGGTGCGTCTCGtgatcaaaacaacaacaacgacgAGAAGCCACCAAGCCCAGTCCGGCCACCAAGCCCAGTGGACAGTCGGAGTGAGAACAAAACGGGCCACTTAACAAACCAAAGTTTCCAAAGCACATCTTCAGCAGAGGCTGAGCTGCAAGCATTAACCGGTAGCATAGCGAGCAGCAGATCAAGCAGCAAAATAGTGAGAAAGCTCCCTATTAAACCCCCCAAAATAAACCATCACAAGGAGCTGAAACTCTCAGGTGCCTGGCCTGGGAACCAATACCGGGACCAGGAGACCCAAACTAGCCCAGAAGCCCGAAAGCCTCAGCATCCCCCTCCTCCAGGCACTGAAAACAAGGAAGCACAAGACCCTCACGTCCCTGCCCCAGGCTCCTCTGACGTCATCACCCAAGATCCCAGTGGTGTGGGCAATACTGCATTCAGCTGTCCTATAAAAGGGGTGAAGAGCCTGAAACCATCCAGCAACAGCGCCTTTTCCAGGACGGCCACTTTCTCCATTTCCAGCCAGCTGATCAAGAGCACAGCTCAGCCGCCAgcagcgccaccaccaccaccaccaccaccctcaggAAACGCGATGGAGGCCAAACCAGCAGCGACCTGCAGTGGGCAGGAAGCCTTCGGTCAGTTCCTGCTGAAGCCCGTCAGCAGGCGGCCATGGGACGCCATCGAGGAGCTGGAGACTATCAACAAAGAGTTCCAGGAtcagcagcagcagaagcagcagcagaGCAGCAAGAGGCACAGTGTTGACCAGTGCATTGAGGACCTCAACGAGGCCTATAAAGACATCCTGGAGCTAGGCACTGCCAGCAATAACATTTCCAACAATAGTGGTGCTGTGCAGATCCCTGAGCGGATCAAGATAAGGCTGGCGGGGGAGGCGGGGCTCAGCAAGCCCAGCAGCCTTAGGCGCAGTATTGAGAGCTGGTCTGTGTCCGTCGACCCGGAGTACGGGGAGGTTAAGAGCGCTTTCTCCAGACCTGCTGAAAGAAAATCTGTGACTTTCAGCAAGCAGCTAAGAGAGGAGCTCCCTGTCCCACCACGCAAGCCTACAGGATTCAGAGAATACAGGGTTGTTTCGAACTTGTCGCAGAGGAGAAGTAGCTGCAGTGGCAGGACAGTGAAGCTAGACCTCCCTTCGCCTTCGGAGACACCACCGCCTTGTCACTTCACCGGCCCTAGTGACTTTACTGACTCTCCTAGTGATCCCAGCAAGACCAGAGACTTCAGTCCAATGACTCCAACAACGCACACTGCAGCCGAAGTCCCCTGGGCAGATAGGCAGCCGATGCAGGACGCCTCCACACTTACGAGTCCCCCTGACTATGAGGACATATGTCAGTCTTTACAAAAGCCCCGAGACTCAGAGGTTAACAAAACGTTCACCGCCATATCTAAACCTGGTGGTGGTAGCTGCGATACAGAGCCTATAGGGGGAGCCTGTTTAGACTCTGCAGAGGAATGCCCCATTTGTAAAAGAGAGCGCGAGAGCCAGATGTCCAGACCAAGTCCAATGTCTCCGCTCCACGAGGAGTCAAGCCCAGACTTATCCGATCAAAGTAGCGCGACGATTGTTGGCGACCGTGACAGTCCACAAGGAGCTGAAACatctgaagaaccagctgaaggTGAAGGAGACACAAAGGTATCCTCTGACTCTGGCTCAAATCATTCAGAGGCTCAGACTATATGTTGCGATTGGAGGAAGCAGCTGTCACTCATAGATAAGAAGGTGGAGGGGAGTATCACTGCTGAGAAGACCAAACAAAACCAAGCTCTGGCAGTGGCTGAGGGCATTCCAGAGAATGAATCCATAGAGGAGAGGGCAGCCAGGATATTAGGGATTGATGTACCTGCAGAGTCTTTAGTCACAGGGGAGCAGCGGGTTAGCGAGACGGCAACAGAGAGTAAACCCGCTGCTAGTGAAGATACAGAAAGCAGCAGGGCAAACGAACAGACAGTACAAACACATGTGAGAGATCCAGATTCTGAGGAACTGGACTCTGGAACGGTATCTACAGTGCCTCCTGACAGGCAGGAGGCAAAAGAAAAGGAGACACCACAGGATAACCCAGAGTACATCAGGAGTGCCAAATGGACCCATCTGGGTCGAGAAACTCCAGGTATGCAGGAGTTTCCGCCAGACAGACTACCGCTTTCGGTCCccattaaccctgaccttaagcTGTCCCACagtctggagggagagatgaggggcaGAGGACCCTTGCAGCGCGTAGATGCCCTGCAGGATAAGCTGGCTGCATCGCCCAGCCACCGGGTGGCGGTAGAGCGCCGGGCACGGATGAAGGAAGTGGACCCAGTGTCGCGCATGAGATGCCTCAGCATCAGGAGCACAGACTctggggaggagggggcagagacggagggggagaccAAGCGTGGCGGTGGGCAAGTGGAAGTGCTCTCCCTACCTGCTTCCTCCCAGAGTGATACTGTGGAAGATAGAGAGGTCTCTGAAGACACAGTGTTGCAAGATGAGGAGGTGTCATCTCTCTCAGAGGCCTACGACCCAAGCGGAGTGGAGAAAGTGTAGAGCGACTGAGACGCCCATCATCTTTTTCCATCGGAGGTTTAGATCCCTCCAACACTGTGACCTGGCAGCCCACTAGAATGCCTTCATCTTATCCCAACACAGAAATGGCCTTCTTCTCCGACAAGAGCATTGTGTACACCCTCAACCTCGGCGTTGTTGAGTACTATGAGTACCAAGTGTCCCACTGCCAAAAGGGAGGTGTTCCCTATACCTAGGGTTATCTTCCAActaacccccctcctcccctttacCTCCCCTCAACCCATCCTCTAATTGTGTTTCTACTAGGATgcggcccaaatggcaccctacttccTAGTGCACGACTTTTGTAACCCTActtccaatgtagtgcactacttttgaccaggtccctttttgaccagggcccagaaagcagtgcactacatagggaatagggtgccatttcagactgaATTCCAGTCTTCTGGTAGTGGCTTGTCCTTTCTCCTTTCTTATTCTACCCTCCTAGATTATTTTAATTGGCAGACATTATGCAATTCTGTCAAGCGTATAACAACTTCAAGTATGTTGAAATTGAATACAGTTAGTTGACTCATCGTTAACATGCTGTATGATTCTGTTTGTTTATGGGCGAGCTGTTTAGATATAAATGTAAGTACTTGTGTTTTACACAATGGATACATAGGGAGAATATTCATCATAAAAGCTGTTCCATTACATTCAGTGTCGATTACACCAAAATAGTTACATTGTATTGTTATTATGGAGAGTTGAGAAGAAATATATTATATTGGACGACAATGTCTTTGGCTCGAGAACTGTTTTCTTTTTCAGATTAATCCATCAATCCATCAGTCTACTATTACTGTGATACACTGTGGCCTGTCTGTATCGTCGCTTTCCTGCATACTGTAATCATAACCCATAAAGCTCTTCAATGAAGAGTCACTCTATACCTACCTATGTGGCATAATGGTAAATCAGTGATACTGTATGTATTCTGAGGCATTGGTTCTACATTATGGGGGGAAGGGAGTTGACTAGCCTGAGTGTCAGTATATTTGTGCTATCATGTCACTCATTGGCTttcagggttgggatcaattccatttaaattccagtctattcagaaagtaaacaaaatgttttttaaaaaaaaaagtgttaaaaataatttcagtgtacttcctgaattgactggaattgaaaagaaattgaccccaaccctgttgAATTGACAATGAGCATTGGACTTGTCAAGAGCACAAACAAATCTGTATCCAGATGTGCATGTATAAGCTGGGTCAGGATATATAAGACCATTCTGGGTAGTTAACTTAAATGTTGTAAAAAATCTGGTGTATAGCTCGATTTCCCAGGTCATTTCAGGAAGCAATAATGGCATGGAGTGTGGCAGTTTGAGTTGTAAACAAGAATTATATGGACAAGATAGAGCAATATTGTCATACAAACAGCTGTGGCTTAGTCAGTGGAGCTGGGAACCATTGTCAGGAATCTCGTTGTATACGTACCCAAAttcctccctattccctatatagtgcaatacttttgaccagagcccaatgagtcatggtcaaaagtagtgcacaaaatagtcaatggggtgccatttgggatgtaacactTCCCGCAGCAAAATGGAAATGTGTCAGAGTATACTGGGTGTGGGTGGGTGCTTATTTCATTGAAAATATCAGTGGCCATACTTGTGTATCATGTGAAGAAACTACGGCAGTGTCTGAAATGacactattcactatatagtgcactaccttcgaccaggacctatagggctctggtaaaaagtagtgcactatagggaatatggtgccatttcagacgcagcctacatttcactgaatatttatttttgttatcaTTGAATTGTTAATCAGTTTGCATAATGTACAAAATAAagtatattttaaatattttaagaGGTATTTTGTATTTAACCATTATAGTTTATTTCTGCATACTTTGATCACAAGTTGAAAGTATCATAATGTCTGTACAGTACCATAATGAGAGTATATAATTTTCtagtgcaaaaaaaaacatttaagaaAATAGATTGACATAAAGAAGGATGACCTAACAAGCAAAGCTGTGTGCAGTGTGCCTTGATCACACGTTTGTTCTGTGTAGTGACAAGATGAGGGTTAATCTTCTTTCTGAGTCTTGACTTGATGGGAAAATCTGGTTGTGCCATGAGTTCCTATTTGTAGTGCATTTTCACATGAAAAAACAGTTGAACATTTGATGTTGGGCATTCTTTATTATATTTGATCCATCACAGCTGTGTTCTTCTGTTTATGGTCAGCTGTGACCTGCAGTGTTGTGGTCAATTCCATTTGAATCCCGGAACATAATGCTCAATGCTGGTGTATGGGAAAAAATGTGGAATCAGAATCGTAGTTTCAGTTCACTTCCGGAATTGACCCCAACTCCGCTGACCtgtcttatttttttttatttttatgtcttCCAAGCCAAGTCACATACTGTTGTTTTGTTGCTGATTCATGGCAACACGTTTACAAATGtaaaataaatccattattttattaATGCAACTTAACATTTCTTTATACATTGAGCGACGTTTGAGTTTCAGACAGCTGTCAATGATACAATGGTTAGGGAAGGGTGTATAATGCTTCGATAAAGGTGCACGTTAATGTTGTTTTCCTATTTGTCAAAGGTGAATACATCTACTGCTCAATCCCAGTTTTATAACGTACACTTTAATGTAGCATTATTGCGGCTGTAGTATTTAATTGACTTAGAACTTTATGCTACTCTTAATATATCTGAccaacatatttaaaaaaatgtaataatcatGGCACCTAAGGCAATTGTGTGCATTACATTATACTTAAGGCAATGCCAAATAATTACTAATTGCACACTGTTACATCATTTTAGGTGTCACAAACAACTTATTCTGGTTCTGCGACTTCTTAAGCCTGAAAGGTAGCAATGTTGACTGCATACTTAAATAGTGACTGCCCTTCACTTACTTTTCTCTGCCTGAGTCATTCAAAAATGAGGAGAACCGTGCAGTTAGTCCAACATAATACAGGCTTCTTAAATGCACAACTCTCACACAAAACAACTATAGGCAGAGCAAGAGAACTCAGTAGTGTGTTTATCTGTTCAGTCCATTGATCAATATCATTGCTCAGTATCACATGTAAAGCAACCAAGCATTTGGTCTGAACGAAGTACCATTTTCAAGACTTTTGCTTGATGATAATGAAGGCCTCAGTCTAAAGAAGGAAACTGACCCTCGATCATGCCACTAAAATGGCCATTACAGAGCATAGCTAGGCCCGATGAATTGGCATGCCAGATGAAGCTAGAACTTAGTGTCATTTGACGTTTTGTACTGCAGGCTATGTGCAACATGAATAATTATGCACACTTGTTGTAATATTTTCTATTTTCATAAGAGATTTATTTAAGAGCTTTTTGTACTCACTGACATTTTTTTCTTACATGAAATGCAAGAGAGAGGAGGATTCTTTTCTTTTGTTGCATACAGTATATTTGCATTTGGTACTCTCCAGTAGTCAAAACGAACGAATGGGCAACCATTATCTTTCAGAATTTTATTTACAAACTATGCCAAGTATTTAAAGGCAATTTTTTGAGTAAAATCCAATGGAAaaacattcatttatttttccttttaaAGCATTTTATTTGCTTTGTATTGATGAATATGAACATAATACATAGTCAAATGATTGTGCTACTGTTGTATGACACTGCAGTCTGATTCATAAATAAACTCCTTGCATGAAG

Function

NR:

description
junctional protein associated with coronary artery disease-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588775.2 True 8747 mRNA 0.47 4 1803794 1836904

Neighbor

gene id symbol gene type direction distance location
LOC110508331 LOC106600487 coding upstream 5599 1791719 ~ 1798195 (+)
LOC110508321 LOC106600497 coding upstream 388977 1402727 ~ 1414817 (+)
LOC110509189 LOC106600499 coding upstream 486262 1243968 ~ 1317532 (+)
LOC110509188 LOC106600502 coding upstream 642869 1125824 ~ 1160925 (+)
prkci LOC106600503 coding upstream 696196 1036522 ~ 1107598 (+)
LOC110508334 LOC106600477 coding downstream 11611 1848515 ~ 1918387 (+)
LOC110509192 LOC106600604 coding downstream 257172 2094076 ~ 2190557 (+)
LOC110508337 scg2 coding downstream 622728 2459632 ~ 2464135 (+)
LOC110508340 LOC106600596 coding downstream 640854 2477758 ~ 2483196 (+)
LOC118944816 NA coding downstream 659825 2496729 ~ 2508118 (+)
G2093960 mpz non-coding upstream 107308 1684106 ~ 1696486 (+)
G2094032 NA non-coding upstream 138678 1662990 ~ 1665116 (+)
G2094029 NA non-coding upstream 144042 1657301 ~ 1659752 (+)
G2094023 LOC106600492 non-coding upstream 154297 1648055 ~ 1649497 (+)
G2093947 NA non-coding upstream 268540 1535037 ~ 1535254 (+)
G2094519 NA non-coding downstream 139222 1976126 ~ 1976332 (+)
G2094523 NA non-coding downstream 140455 1977359 ~ 1977571 (+)
G2094595 NA non-coding downstream 239840 2076744 ~ 2077032 (+)
G2094599 NA non-coding downstream 248077 2084981 ~ 2085229 (+)
G2094624 NA non-coding downstream 367882 2204786 ~ 2207029 (+)
G2093889 NA other upstream 357673 1444633 ~ 1446121 (+)
G2092558 NA other upstream 1109136 694133 ~ 694658 (+)
G2094884 NA other downstream 816959 2653863 ~ 2655091 (+)
yeats2 yeats2 other downstream 1063946 2900784 ~ 2969598 (+)
G2095895 LOC106600579 other downstream 1504280 3341184 ~ 3341519 (+)
G2096475 NA other downstream 2050476 3887380 ~ 3907871 (+)

Expression


Co-expression Network