LOC110508366 (LOC106600565)


Basic Information

Item Value
gene id LOC110508366
gene name LOC106600565
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3776296 ~ 3786634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588842.2
CATGATTTGTGCTGCTGGCAGAATACTGGTGCGTCCTTCCTTATACCGCGCACCCTCAATTTGACTGCAGTAATCCCGAGAAGTGCGTTTCAGGTTATTTACTGATATGCAGCAGTATTTGTAGGAGATATGAAGCTGTGTCAGATCGTCGTCTCAAATTTCGTGTACCGGTATGTACCTTGTCGACCACGGAGATAATTGCGAATTTGCGACGGATTACGACAAGCGACCCTTTTCTCAACCCGCGGTTCCGTATTGACTGAGCACTATGCATTCAACTTTCTGAAAAACATTGGGCTTTTGCTATCGGTAGCCTCTTTGCCAACAGCAACAATGTATAATGTTATAAAAGGACTTGTTCTAACAGAATCCCGATGCTGGGATCCCGATAGTGAAAGGTCATACCAAGACCTATTCGATAAACTGGACACCAACAAGGATGGGAAGGTCGATGTTGCTGAATTGAGAGCGGGCCTAACCGCAATGGGCATGTCATTCCGCAGAGGTGCAGCGCAGAAAATTGTATCGTCTGGTGACGAAAACAAAGATGGAGGGCTTGACTTCAATGAGTTCAACAAATACCTGAAAGAACACGAGAAGAAACTGCGCCTGACGTTCAAGAGCTTGGACAAAAACAACGATGGGCACATCGATGCCTCTGAGATCAAGCAGTCCCTTGAAGAGCTGGGCATGGACATAACCAAGGAAGAGGCCCAGACCATCCTACAAAGCATGGACATTGATGGCACCATGATGGTGGACTGGAACGAGTGGAGGGATCACTTCCTGTTCAATCCTGCCCATAACCTGAACGAGATCATACGCTACTGGAAACACTCCTCGGTGCTGGACATAGGTGAGAGCATTGCCATCCCTGATGAGttcacagaggaggagaagacctCTGGTGGCTGGTGGAAACAGCTGGCGGCCGGGGCGATGGCTGGGGCGGTCTCTCGCACAGGCACCGCCCCCCTGGACAGGGTGAAGGTCTTCATGCAGGTCCACTCCTCCAAGTCCAACCGGGTCACCCTGCTGGGAGGATTCAAGCAGATGATTAAGGAAGGGGGCGTGGCCTCATTATGGCGAGGGAACGGGGTCAACGTGTTAAAAATAGCCCCTGAGACTGCTATCAAGTTCATGGCCTACGAACAGTATAAGAAGCTGCTGACACCAGAGGGAGGGAAGGTCCAGACCCACCAGAGGTTCATGGCTGGCTCTCTGGCAGGAGCCACCGCCCAGTCATCCATCTACCCCATGGAGGTGATGAAGACCAGACTGACTCTGGGGAAAACTGGCCAGTATAATGGAATGTTTGACTGTGCCAAGAAGATTCTGAGGAAAGAGGGCATCAAAGCCTTCTATAAAGGCTACACTCCCAACATGATAGGCATCATTCCCTATGCTGGCATCGACCTAGCTGTTTACGAGAGCCTGAAGAATGCATGGTTGTCCCGCTATGCCAAAGACACAGCCAACCCTGGCATCTTGGTGCTGTTGGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGCTGGCCAGTTACCCCCTCGCCCTGCTTCGCACACGCATGCAGGCACAAGCAACTCTGGAAGCGTCGGACAAGTCCACCATGACTGGACTGATGAAGGGGATCATGGCTAACGAGGGTTTCTTTGGACTGTACCGGGGTATCCTGCCCAACTTCATGAAAGTGATTCCTGCTGTGAGCCTCAGCTATGTGGTCTACGAGTACATGAAGACCGGCCTGGGGATCTCCAAATGATGCAGGGACAGTCATACAGGATGTTAAGTCTTTAGGTCTTTTTGGACAGTTTAGTTGGAACTTAGTGATCCGCACAGACTTTTATGACAACCAAACGTTGCCATCTTGTGATCACTCTGTGTACTGGGCCTTACGAGGAGAACCATGAAATCAAGGTTGGGTCTGAGATAGGCCATAGCAGTAGACTCTCCAAAAAGGATGCTCTTCTCTTTAACTCCAGGTGAAATTCCAATATGGTGCAATATACCCGTTAAGAACTGCATTATGGACCTTAAAACATAGAGGACGAGGTATCGATGTCTTCAGGTGAACACTGTGAACGAGGTTCAAGAGCTTTGTCCAAACTATTTTTGTTCCACTGTAATATTAGACGCTCCATGCGCACATTTTAGAGAATCCCACACTACTACAGTTTGCTATAGAATTCTGTGGTAAATtgtagtctgggtaccagtcaaTTTAGCTAACGTTCCACTACCTGTACTCCGTGTCATAAGATATATTTAAAGAATGAAGAAAGACCCGTCTCTTTGGAATATGACATGGAGTAGgctacaaggagtggaatgttagctaaatagACTGGTACCCATCATCAACGAGCACTCCGGGTTGAGTATGATTGTCCTCCTGGTGGGTCCTGCTTGTGGGTCTTCAGATGGCTGAAGAGGCCGATCCGGGAGCCACATATTTTGATGCGGTATGGGCCAGGGTGAGTGGTGGTGGCAGGTGGGCGTTCTTGATGGGAAGTCTCTCCTTTCGAAGTTGCCGCTTGTCCTCTGCGGCACGGCAGAGATTTTCTTTGTACCATGCAACTTCGTCGTGGACAGCTTTTCTCCATGTCGACCTGTcgaggagtggaatgttagccaAAAaggctggtacccaggctaagtaaactgtagtatactgtagaatactatactacacacggTAGTATCCCTCGATCAGGGTATTACTTAATATATAATttggtagtatactgtagaatactatactacacagtgtGGTATTCCTCattcatgtgtagtacttactgtaGAATTCTGTAGTGAATTCTGtagaaatatattataatatttgAATAACTATAGTATATTAGTAATATATGCataaaacactatagtaaatagtACAGTCATGTCCACAGAACACTGCAGTACATACTATAGTTTTTTaactatagtaatactacagtatttataagtGTGCCTTACCCTCAGTTCAATATCATATGTTTCTATCTTATTTGGTTGGTTATATTTATTTGTACAGGTTagtgtcatttacaactgctgtTTTAATGCAATGTTTTCACGTGTTTTAACAGATGATTTACAAACATGTCTTTTTTTCCTTTGTGCTATTCTTGAAATACAATGCCTACCCTGTTGTTGACCATTAAGCTGAATCTCAAGCAAAAATATTCATCGTTACAAAAGCTTGCATGCAAATATTGTCTATGAATCATTACTGGAGCTGAGGGGGAAGTCTTAAAAGATGCTGCCTCTTTTTTTGCTAAGCTTGACTGAAATTTAAGTAGGTTGTCTACTGTCAATACTGGTTTCCAATTCAGAATCGCTTCAGgatccccccctacacacacactccatatgcaTGCCATGCACCCACTAAAGATTTTTACTACTTGAGGCCAATGGTTGTTATGTTGCATCAATGTCTTATGTCTTAATTATGTTTGAATATGTAATAGGTCTACTATGCCTGAATGAATTGACATTGTGAGAGTTGTATGAATGTCCTCACAAAGCTTAGACTGAAAGAAAAGCAATGCATGTGTTATGGGTcgaaacaaatgtttacagatgGTTGTCCACGTATAAATAAAAATTCACAATGGAA

Function

NR:

description
calcium-binding mitochondrial carrier protein SCaMC-1-like

GO: NA

KEGG:

id description
K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588842.2 True 3627 mRNA 0.45 10 3776296 3786634

Neighbor

gene id symbol gene type direction distance location
LOC110508363 LOC106600569 coding upstream 67644 3701897 ~ 3708652 (+)
aknad1 LOC106600569 coding upstream 72529 3696204 ~ 3703767 (+)
wdr47a LOC106600571 coding upstream 111088 3641855 ~ 3665208 (+)
LOC110508359 LOC106600572 coding upstream 136447 3573151 ~ 3639849 (+)
ccl20a.3 LOC106600611 coding upstream 274308 3500844 ~ 3501988 (+)
LOC110508367 LOC106600566 coding downstream 3560 3790194 ~ 3791599 (+)
LOC100653486 LOC106600564 coding downstream 10908 3797542 ~ 3814890 (+)
LOC118944845 NA coding downstream 183718 3970352 ~ 3972045 (+)
LOC110508370 LOC106600557 coding downstream 474073 4260707 ~ 4280126 (+)
LOC110508371 LOC106600556 coding downstream 502683 4289317 ~ 4338388 (+)
G2096395 NA non-coding upstream 17743 3758210 ~ 3758553 (+)
G2096394 NA non-coding upstream 18135 3757904 ~ 3758161 (+)
G2096393 NA non-coding upstream 18546 3757438 ~ 3757750 (+)
G2096386 NA non-coding upstream 30824 3744725 ~ 3745472 (+)
G2096385 LOC106600567 non-coding upstream 32013 3744049 ~ 3744283 (+)
G2096430 NA non-coding downstream 45218 3831852 ~ 3832243 (+)
G2096426 NA non-coding downstream 47878 3834512 ~ 3835016 (+)
G2096431 NA non-coding downstream 49032 3835666 ~ 3836009 (+)
G2096448 NA non-coding downstream 49575 3836209 ~ 3837205 (+)
G2096461 NA non-coding downstream 75173 3861807 ~ 3873627 (+)
G2095895 LOC106600579 other upstream 434777 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 869091 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1121205 2653863 ~ 2655091 (+)
LOC110509192 LOC106600604 other upstream 1592678 2094076 ~ 2190557 (+)
G2093960 mpz other upstream 2081827 1684106 ~ 1696486 (+)
G2096475 NA other downstream 100746 3887380 ~ 3907871 (+)
G2096472 NA other downstream 112952 3899586 ~ 3917985 (+)
G2097031 NA other downstream 749442 4536076 ~ 4536894 (+)
slc17a9b LOC106600547 other downstream 924838 4682499 ~ 4714289 (+)
G2098625 NA other downstream 2181927 5968561 ~ 5998314 (+)

Expression


Co-expression Network