LOC110508367 (LOC106600566)


Basic Information

Item Value
gene id LOC110508367
gene name LOC106600566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3790194 ~ 3791599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040226.1
AAAACACAACTTTGATAGAATAATCAACAGAAAGTCCTAACACATAACTGGTAAACCCAATGCCTTGTCTACATGTTCTCTACCTCTCAGTCCTATTCCCACTCCTCCAGAAGCAGGGCAGTGATGACCCCAGTTGTCCCTATAGCTCCGGGGGAGCTGGAGTCCCCTGGGACCAGTGATGATGAGGAGGCCACAGACCGGAAGGAGAGGGTCTCCAGTGCCAGGGAACGCCATGAGCAAGCCAAAGCCATGATGGACACATTCACTGAGAAGTTCCACTCTATCGCAGAGGATCTCCAAGAGATGAAGATTCCCAGGAAGAGGTCCACTTGACTGCGGTCATCATGCTCCCAGTCTGCCAATGAGGATGGATCCCCTCTGGCCTCTACCCAATCAGATAAGGCCCTGAGGCGAGACTGGTCTCGACATATGATTACAGCCGGAGAGGCCGGTGGTGACATCAATCGAACACCTTCATCAGCGTCATTATTCTCTTTGCCAACCATTTATGAGGTCGTCAAGGGGAGCAGGGAGTCCAAACCTGATGTGTCCGGAGATGATGTCAAAAAGAGCAAGATGTCCAAATGTAAAGTCAGGCAAGGCTTTCGCTATTTCACCAAGGCTTTGACTGGACTGTTGCGTACAAAAGATGACCCTACTGGAGATGGACGGATTGCGCGAAGTGTGACACCATCCAATGACACACTCAACATGGTCATGGCTCCTCCACATCCACTCACTAACTGGCATTTGTGAACTACATTCAGACAAAAAGGCAACCGCATTTTGTATGGATGATATTTAGCAGAGGATATGTTTTTATTATATAAAGGATACAAATGAATAA

Function

NR:

description
uncharacterized protein LOC110508367 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040226.1 True 847 mRNA 0.48 3 3790194 3791599

Neighbor

gene id symbol gene type direction distance location
LOC110508366 LOC106600565 coding upstream 3560 3776296 ~ 3786634 (+)
LOC110508363 LOC106600569 coding upstream 81542 3701897 ~ 3708652 (+)
aknad1 LOC106600569 coding upstream 86427 3696204 ~ 3703767 (+)
wdr47a LOC106600571 coding upstream 124986 3641855 ~ 3665208 (+)
LOC110508359 LOC106600572 coding upstream 150345 3573151 ~ 3639849 (+)
LOC100653486 LOC106600564 coding downstream 5943 3797542 ~ 3814890 (+)
LOC118944845 NA coding downstream 178753 3970352 ~ 3972045 (+)
LOC110508370 LOC106600557 coding downstream 469108 4260707 ~ 4280126 (+)
LOC110508371 LOC106600556 coding downstream 497718 4289317 ~ 4338388 (+)
LOC110508372 LOC106600555 coding downstream 547555 4339154 ~ 4343438 (+)
G2096395 NA non-coding upstream 31641 3758210 ~ 3758553 (+)
G2096394 NA non-coding upstream 32033 3757904 ~ 3758161 (+)
G2096393 NA non-coding upstream 32444 3757438 ~ 3757750 (+)
G2096386 NA non-coding upstream 44722 3744725 ~ 3745472 (+)
G2096385 LOC106600567 non-coding upstream 45911 3744049 ~ 3744283 (+)
G2096430 NA non-coding downstream 40253 3831852 ~ 3832243 (+)
G2096426 NA non-coding downstream 42913 3834512 ~ 3835016 (+)
G2096431 NA non-coding downstream 44067 3835666 ~ 3836009 (+)
G2096448 NA non-coding downstream 44610 3836209 ~ 3837205 (+)
G2096461 NA non-coding downstream 70208 3861807 ~ 3873627 (+)
G2095895 LOC106600579 other upstream 448675 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 882989 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1135103 2653863 ~ 2655091 (+)
LOC110509192 LOC106600604 other upstream 1606576 2094076 ~ 2190557 (+)
G2093960 mpz other upstream 2095725 1684106 ~ 1696486 (+)
G2096475 NA other downstream 95781 3887380 ~ 3907871 (+)
G2096472 NA other downstream 107987 3899586 ~ 3917985 (+)
G2097031 NA other downstream 744477 4536076 ~ 4536894 (+)
slc17a9b LOC106600547 other downstream 919873 4682499 ~ 4714289 (+)
G2098625 NA other downstream 2176962 5968561 ~ 5998314 (+)

Expression


Co-expression Network