LOC100653486 (LOC106600564)


Basic Information

Item Value
gene id LOC100653486
gene name LOC106600564
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3797542 ~ 3814890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588846.2
TGCGTTTTTAAAAGTTTTTATCCTATCAGTATCGAAACATGCTCCAATGACGCACAGCGACCGCTCTCTCTGGGTGGTGTTTTCTCTCTGCGCAGTGTTTTGGGAAAAGCATGATCCATCTTCGACTGTTGAAGGAAAGATGCATCGTTAAAACACTCTTGGTGATACGCATTGTGAAGAAGAATGTTGATGTTGTTGAAGAGGAAGACTCAGTGGTAAACAAACTCCAAATCGTGTAATTTGCTTGTCCTGGCTGGAGACTGAGTGAAGGATCATGGGTAACACAGGTGACCGGATGTCCGGTGATCGCCATGGTGCTAAGGCCCATCGATCAGACAGCAGAGGCAGCGACAAAGACCATGAGCCCAGCAAGATGGTGGACAGCACAGACGATCCTAACATCTTCAACACACACGGACTGGGGTCCTCCAAGGCGTCGGACAAGGAGGAGCCTGACCTGGATGACTTGGTGAAGACGGGGCCTCAATCCAGACCTACAGTCATCCGCTGGGccggaggagggaaggaggtcTATATCGCGGGCTCCTTCAACAACTGGGGCAACAAGATCCCCCTCAATaagagccacaATGACTTTGTAGCGATCCTGGACTTGCCAGAGGGAGAGCACCAGTACAAGTTCTTTGTGGACGGACAGTGGGTCCATGACCCCTCAGAGCCAGTGGTGACCAGCCAGTTGGGCACCATCAACAACCTGATCGAGGTGAAGCAGTCGGACTTTGAGGTGTTCGATGCTCTGCAGGTGGACTCTCTGGAGTCCACCGACACCTCAGATCTGTCCAGCTCCCCTCCAGGGCCCTATGGACAGGAGCAGTACATGTTTAGGCCTGAGGAACGCTTCAAAGCCCCGCCCATCctccccccacacctcctccaagTCATCCTCAACAAGGACACCAACATCTCTTGCGACCCAGCCTTGCTGCCTGAACCCAACCACGTGATGCTCAACCACCTTTATGCTCTCTCAATAAAGGATGGCGTGATGGTGCTCAGTGCGACTCACAGATATAAGAAGAAGTACGTCACATCTCTGCTCTACAAGCCCATCTAACCTGTCTGTGTAGGTGCAGAGTGCTAGAGGGCGGCATGTTAACACTGTACTGGGTTTAACCATCGTGTAGCTGAGATTGCACTAAACTAACAGTTTACTGATGAGACTAGGGGCAAATCTCAAAGGACACCCTTTTCCTTGTCCAGTGACCTACAGGGCTCCACAAAGGGCTCAAAGTAAAGCACTCGATggggaatagggtttcatttgagTCTCAGCGTGTGACCCTCACAAGGGAAAATACTTAGCATTCACAGTTTGATAGCGATAAGAAAAGGGACTGAGAAGGAGactactgtgtgtgtttgcgtggagCACTTCTTTGCATGTGGGCGTGTAGAAAGAACATTTAGTTCCATTAAAAACATGAAGGTTTGAAGAAAAGTCCTGATGGATCTTGGAAATGCATATAATCAAGATGATGTTTTATTAAATGAGCTTTTAAAAGATATGAACAGGGAAAGAGGGCCGTTGAATGTCGCTGGTTGGATTATGGTACACTCCCATTCTTTCTCCATATTAATACAGTAGTTGGACATGACTGGAGTAACTGCAGGTTCTTCCTGGTTTGGTCCCAATGGGTCGATGACCACTAATCGAACCATGATATGCAATTGGATAGGCTGTAAATTGAACTGAATTATAATGAAGTCAAAGTATAACAAAGGATGGGAATAATATCGTAAAGCCCGTTTAAGCCTATCACACTGGCCAAATCAactttgtttccacgtcatttcaatgttaGGACGTCTGTGCTCATTGGGATATGATTCACACTTTTGAAAAATGTGAAAATCCCTTTAAACTACTGTAGAGGCCTCGTATTAATTAGAGTATATTAACGAGGGGTTCTCGTTGGGGAATGTTGGGCCGTGGCTGTAGACctgtgcttagtgctttatgtcTTTATGACACGGTGATGCAAGCACTTGAGTTACCCATCCATGCGTCTCCAACAAATGCTTTAAGCAGGACTGTTGACATAAGCTTTTAACTATGCAGGTATACGGAAAAATATTGCTCAGTAGCTTTATGTTGGACCTCGGTGTCCAAGCTGCATTTTCTAGGCCTTAGATACAGAAATGGCTGTGCTACGTGTTTCTCTCTCTAGCCCATTTTCTATTTATCCAATAGGAATCTATTTGTCTGTGTGCCATATTTATAGCTTACACTCCCAAATACTGGTTTGTCTTGAATGTTGTGGAGCATTTGAATGTCTAGTACGAACAGTTACTGTAGAATATGTGGTGGATTTTATGGATTTCAATCAAGATTCAAAATGTCATTCAGTGAAGTATAAAATGGCCAATATGGATTTCAATCAAGATTCAAAATGTCATTCAGTAAAGTATAAAATGGCCAATATGGAATGTGGAAAAGCGTAATTTACTTTCATCAAGATTGTTAAATTTGAGTGTTCTGTGAATCGAACTTCAAATGTTTGACCATACACCATTTCATATTTGTACGTTGTTAGAGTACTGTACCTGTTGCTTGTGATACCAGTAATCAATGTGGGCTGATATGTAGGTATATACTCCAAagagaatataaatatatatatgagatTTTATTTGAAAAAACTTGAGTAAAGAAATTATTACTGAAAGCCATAGCTAGCTCACTCTGAGACGATACACtgcaacaccttcctaatattgagttataCCTCGCTTTGCCctcagcctcaattcgtcagggcagggccatggactctacaagctgtcaagtgttccacagggatgctggcccatgttgagtccaatgcttctcacagttgtgtcaagttggctggatgtcctttgggtggtggaccattcttgatacacacaggaaaccgcTGAGCgtgtaaaacccagcagcgttgcagttcttgacacactaaaactggtgtgcctgggacctactaccatacccagctCAAAGCTACTTAAATCTTTTGTCAgacccattcaccctctgtatGGCCCACATACacaatgtctcaaggcttaaaaatccatctttaaccggtctcctccccttcacctacactgatttgaagtggatttaataagggattatagctttcacctggattcacctggtcagtttgtcatggaaagagcaggtgttcctaatgttttgtacactcagtgaacgATATGTGATATTCTGGAACTTGATTAGGTAAAAACAAAACTTGAATTTTTTATCTGTTAGctaacatgtttttttcttctccaaaaTGCTTTGCAGCATCATTGTAAGCCAAGTACTGTAGAAGGTTGTTTCAGTTTGCAAATAAAAAGGGGAGACATGTTGACTCTAAA

Function

NR:

description
PREDICTED: 5'-AMP-activated protein kinase subunit beta-2-like

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588846.2 True 3390 mRNA 0.44 9 3797542 3814890

Neighbor

gene id symbol gene type direction distance location
LOC110508367 LOC106600566 coding upstream 5943 3790194 ~ 3791599 (+)
LOC110508366 LOC106600565 coding upstream 10908 3776296 ~ 3786634 (+)
LOC110508363 LOC106600569 coding upstream 88890 3701897 ~ 3708652 (+)
aknad1 LOC106600569 coding upstream 93775 3696204 ~ 3703767 (+)
wdr47a LOC106600571 coding upstream 132334 3641855 ~ 3665208 (+)
LOC118944845 NA coding downstream 155462 3970352 ~ 3972045 (+)
LOC110508370 LOC106600557 coding downstream 445817 4260707 ~ 4280126 (+)
LOC110508371 LOC106600556 coding downstream 474427 4289317 ~ 4338388 (+)
LOC110508372 LOC106600555 coding downstream 524264 4339154 ~ 4343438 (+)
LOC110509198 LOC106600553 coding downstream 557907 4372797 ~ 4378889 (+)
G2096395 NA non-coding upstream 38989 3758210 ~ 3758553 (+)
G2096394 NA non-coding upstream 39381 3757904 ~ 3758161 (+)
G2096393 NA non-coding upstream 39792 3757438 ~ 3757750 (+)
G2096386 NA non-coding upstream 52070 3744725 ~ 3745472 (+)
G2096385 LOC106600567 non-coding upstream 53259 3744049 ~ 3744283 (+)
G2096430 NA non-coding downstream 16962 3831852 ~ 3832243 (+)
G2096426 NA non-coding downstream 19622 3834512 ~ 3835016 (+)
G2096431 NA non-coding downstream 20776 3835666 ~ 3836009 (+)
G2096448 NA non-coding downstream 21319 3836209 ~ 3837205 (+)
G2096461 NA non-coding downstream 46917 3861807 ~ 3873627 (+)
G2095895 LOC106600579 other upstream 456023 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 890337 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1142451 2653863 ~ 2655091 (+)
LOC110509192 LOC106600604 other upstream 1613924 2094076 ~ 2190557 (+)
G2093960 mpz other upstream 2103073 1684106 ~ 1696486 (+)
G2096475 NA other downstream 72490 3887380 ~ 3907871 (+)
G2096472 NA other downstream 84696 3899586 ~ 3917985 (+)
G2097031 NA other downstream 721186 4536076 ~ 4536894 (+)
slc17a9b LOC106600547 other downstream 896582 4682499 ~ 4714289 (+)
G2098625 NA other downstream 2153671 5968561 ~ 5998314 (+)

Expression


Co-expression Network