LOC118944845


Basic Information

Item Value
gene id LOC118944845
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3970352 ~ 3972045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040221.1
catattctaagtccgaaccgtccagagtagtgacgctggacgggcgggcaggtatgggcagcgatcggttgattTAATTTTACTTGCATtcacagtttttctcaattgctaaaacactaaaacccattggctgaacaaagttctcagttgcctggactcatttagctaattatgcagtctgttatcagtaccttaaaccatttcacatggtaaaacacaattttcagATCTCACTTAGTCTTTTCAGCAAAACtataaacacattctcattctcaaaacacattctgcactctaatgcacatgtcatccatactggtaaacacaagtggcaatcAAATACAAGTAGAGAAGACATGTCATTGATTCAACACAagcactcaaaattgatttaacctgtttcaaatgatgcgacacaacctatataagccagttcagagagcaaacaggatgttgaaggtgggaaggagaaagtctgagaatggatagaagAAACAATGTGAGAGGACGAGGACGAGTGCGTATGCGAGGTGGGCGACAAGGAGGAGGGCAAgaaagacgaagaggaggacgaagaggaagaggaagacaaagagtggAAATATCTGATAAAATTCAAGCAACAGTTATAGACCATGTTCTTGTCCATGGACTGACAATGAGGGAAGCAGGACTTAGAGTGCAACCCAATTTGAGCCGATTTTCTGTGTCCACCatagtaaggacattcagagaagagaacagAATTGCAAGGTTGCCACATGCAGGTGGAAGGACAGCTATATTCACTCAGCAGCAAGAGGCCCTTATAGTTGGCATGGTCCTTCAATACGACTCAGAGAAATCCAGGAACGAGTGatacaagacaacacacacttcCAGGGAATTGACAGTGTGAGCATTTCCACAATTGACCGTGTCCTCCATCATAACAGGATGCGAATGAAACAAGTATACAGAGTACCTTTTGAGCACAACTCACCAAGGGTGAAAGAACTGCGAGCTCAGTATGTACAAGTACTacaatatttgacttGGAATCCTTGGACAGACCCCATGAGTTCATCTTCGTCGATGAAGCAAGCTTCAATCtaacaaagaggagaaggagaggccaAAACATGATTGGACAGCGGGCCATTGTTGAAGTCCCTGGTTAACGAGGTGGCAATGTCACAATCTGTGCTGCAACCATGGTGTTCTACATCATCATGTTAGGCCATATAACACCCAGCACCTTCTAAGACTTATTGCCAATCTAAGAGATAttttatttgagcagcaggttcaagagcagcagggtcaagagctaaatgagaatccaattcccacctatgtgatagtgtgggacaatgtcagttt

Function

NR:

description
PREDICTED: uncharacterized protein LOC107676188

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040221.1 True 1359 mRNA 0.43 3 3970352 3972045

Neighbor

gene id symbol gene type direction distance location
LOC100653486 LOC106600564 coding upstream 155462 3797542 ~ 3814890 (+)
LOC110508367 LOC106600566 coding upstream 178753 3790194 ~ 3791599 (+)
LOC110508366 LOC106600565 coding upstream 183718 3776296 ~ 3786634 (+)
LOC110508363 LOC106600569 coding upstream 261700 3701897 ~ 3708652 (+)
aknad1 LOC106600569 coding upstream 266585 3696204 ~ 3703767 (+)
LOC110508370 LOC106600557 coding downstream 288662 4260707 ~ 4280126 (+)
LOC110508371 LOC106600556 coding downstream 317272 4289317 ~ 4338388 (+)
LOC110508372 LOC106600555 coding downstream 367109 4339154 ~ 4343438 (+)
LOC110509198 LOC106600553 coding downstream 400752 4372797 ~ 4378889 (+)
trnas-uga-85 NA coding downstream 414682 4386727 ~ 4386808 (+)
G2096499 NA non-coding upstream 10253 3958641 ~ 3960099 (+)
G2096496 NA non-coding upstream 13758 3956334 ~ 3956594 (+)
G2096492 NA non-coding upstream 19663 3950482 ~ 3950689 (+)
G2096491 NA non-coding upstream 21811 3948161 ~ 3948541 (+)
G2096461 NA non-coding upstream 96725 3861807 ~ 3873627 (+)
G2096546 NA non-coding downstream 118351 4090396 ~ 4090613 (+)
G2096790 NA non-coding downstream 118880 4090925 ~ 4091262 (+)
G2096804 NA non-coding downstream 128783 4100828 ~ 4101145 (+)
G2096806 NA non-coding downstream 130716 4102761 ~ 4102983 (+)
G2096846 NA non-coding downstream 209159 4181204 ~ 4181431 (+)
G2096472 NA other upstream 52367 3899586 ~ 3917985 (+)
G2096475 NA other upstream 62481 3887380 ~ 3907871 (+)
G2095895 LOC106600579 other upstream 628833 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 1063147 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1315261 2653863 ~ 2655091 (+)
G2097031 NA other downstream 564031 4536076 ~ 4536894 (+)
slc17a9b LOC106600547 other downstream 739427 4682499 ~ 4714289 (+)
G2098625 NA other downstream 1996516 5968561 ~ 5998314 (+)
G2098849 NA other downstream 2117683 6089728 ~ 6090062 (+)
LOC110509204 prpf6 other downstream 2151683 6123728 ~ 6157102 (+)

Expression


Co-expression Network