LOC110508372 (LOC106600555)


Basic Information

Item Value
gene id LOC110508372
gene name LOC106600555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 4339154 ~ 4343438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588863.2
ACtcggtgtgatcgaggcgttATTGTGCAAATTGGCACGcaagcatcatctggatatgtgtgcaaaataaattcaacattcaccttctgataccatttctgtcaagcagTTTGCATACAATATGATGTATACATTCGATAAATGCAACGCCACCCAGAACAGatcgcactgcaactgcctctgcaacgcaatatTGAAAGGCACTTCTGGTGTTCCAAAACGCAAAACATTGTGTGGGTGATCGAGGAGTAACCTCCTACGAAAAGTCACTTCCGGCCGTAGCTGTATACCACCTTGTCAAACCCGTCACGCTCCGGTCTGTTTTGGAGAAGGGAAGGAGTGGAAGATGGCGGCGTCCAAGGTGAAGCAGGACATGCCTCCTCCTGGAGGTTATGGCCCTGTCGACTATAAGAGAAATCTCCCGAAACGGGGACTTTCTGGGTATAGCATGCTCACCATTGGAGTTGGTGTCATGTGTTTCGGTTATTGGAGACTCTTCAaatggaacagggagaggagGCGGTTGCAGATTGAGGAGCTGGAAGCGAGAATAGCTCTTCTGCCTTTGCTGCAAGCAGAGCAGGACCGAAggcAACTACGGATGCTGAGGGAGAATCTGGAGGAGGAAGCAGTTGTAATGAAAGGTGTCCCCGGCTGGAAGGTAGGCGAGAATGTCTTCCACACAGACCGCTGGGTGGCCCCCCTCACAGAGGAGCTGTTTAACCTTCGACCCCGTGAAGAGCTTCTCCACAAGCGCTTTGGCTTCCTGTGGTACGTGTAGCCGCACCCCAGTCCAACTGTGTACACCTCAGCTACCATACCAGCCACAGCCAGTACCCTTTTGACCGGAGTCCACAACTCCACACAGCTTGTAAATGTTCTATATTAAAGTCATCTTTTCTGTACCCCA
>XM_036966933.1
ACtcggtgtgatcgaggcgttATTGTGCAAATTGGCACGcaagcatcatctggatatgtgtgcaaaataaattcaacattcaccttctgataccatttctgtcaagcagTTTGCATACAATATGATGTATACATTCGATAAATGCAACGCCACCCAGAACAGatcgcactgcaactgcctctgcaacgcaatatTGAAAGGCACTTCTGGTGTTCCAAAACGCAAAACATTGTGTGGGTGATCGAGGAGTAACCTCCTACGAAAAGTCACTTCCGGCCGTAGCTGTATACCACCTTGTCAAACCCGTCACGCTCCGGTCTGTTTTGGAGAAGGGAAGGAGTGGAAGATGGCGGCGTCCAAGGTGAAGCAGGACATGCCTCCTCCTGGAGGTTATGGCCCTGTCGACTATAAGAGAAATCTCCCGAAACGGGGACTTTCTGGGTATAGCATGCTCACCATTGGAGTTGGTGTCATGTGTTTCGGTTATTGGAGACTCTTCAaatggaacagggagaggagGCGGTTGCAGATTGAGGAGCTGGAAGCGAGAATAGCTCTTCTGCCTTTGCTGCAAGCAGAGCAGGACCGAAggcAACTACGGATGCTGAGGGAGAATCTGGAGGAGGAAGCAGTTGTAATGAAAGGTGTCCCCGGCTGGAAGGCGAGAATGTCTTCCACACAGACCGCTGGGTGGCCCCCCTCACAGAGGAGCTGTTTAACCTTCGACCCCGTGAAGAGCTTCTCCACAAGCGCTTTGGCTTCCTGTGGTACGTGTAGCCGCACCCCAGTCCAACTGTGTACACCTCAGCTACCATACCAGCCACAGCCAGTACCCTTTTGACCGGAGTCCACAACTCCACACAGCTTGTAAATGTTCTATATTAAAGTCATCTTTTCTGTACCCCA

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588863.2 False 910 mRNA 0.50 5 4339154 4343438
XM_036966933.1 True 906 mRNA 0.50 5 4339154 4343438

Neighbor

gene id symbol gene type direction distance location
LOC110508371 LOC106600556 coding upstream 766 4289317 ~ 4338388 (+)
LOC110508370 LOC106600557 coding upstream 59028 4260707 ~ 4280126 (+)
LOC118944845 NA coding upstream 367109 3970352 ~ 3972045 (+)
LOC100653486 LOC106600564 coding upstream 524264 3797542 ~ 3814890 (+)
LOC110508367 LOC106600566 coding upstream 547555 3790194 ~ 3791599 (+)
LOC110509198 LOC106600553 coding downstream 29359 4372797 ~ 4378889 (+)
trnas-uga-85 NA coding downstream 43289 4386727 ~ 4386808 (+)
LOC110508375 LOC106600551 coding downstream 151615 4495053 ~ 4526091 (+)
LOC110509199 LOC106600550 coding downstream 200850 4544288 ~ 4547478 (+)
LOC110508377 gid8 coding downstream 333128 4676566 ~ 4679451 (+)
G2096848 NA non-coding upstream 110657 4187105 ~ 4228497 (+)
G2096869 NA non-coding upstream 122245 4216121 ~ 4216909 (+)
G2096863 NA non-coding upstream 132489 4205331 ~ 4206665 (+)
G2096861 NA non-coding upstream 135693 4202395 ~ 4203461 (+)
G2096846 NA non-coding upstream 157723 4181204 ~ 4181431 (+)
G2096921 NA non-coding downstream 824 4344262 ~ 4344565 (+)
G2096907 NA non-coding downstream 6078 4349516 ~ 4349794 (+)
G2096904 NA non-coding downstream 9708 4353146 ~ 4355311 (+)
G2096906 NA non-coding downstream 12453 4355891 ~ 4356977 (+)
G2096924 NA non-coding downstream 17067 4360505 ~ 4360745 (+)
G2096472 NA other upstream 421169 3899586 ~ 3917985 (+)
G2096475 NA other upstream 431283 3887380 ~ 3907871 (+)
G2095895 LOC106600579 other upstream 997635 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 1431949 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1684063 2653863 ~ 2655091 (+)
G2097031 NA other downstream 192638 4536076 ~ 4536894 (+)
slc17a9b LOC106600547 other downstream 368034 4682499 ~ 4714289 (+)
G2098625 NA other downstream 1625123 5968561 ~ 5998314 (+)
G2098849 NA other downstream 1746290 6089728 ~ 6090062 (+)
LOC110509204 prpf6 other downstream 1780290 6123728 ~ 6157102 (+)

Expression


Co-expression Network