LOC110509198 (LOC106600553)


Basic Information

Item Value
gene id LOC110509198
gene name LOC106600553
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 4372797 ~ 4378889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590179.2
ggggagaaaaaaggggtaaaatttaatAAAAAAACAAGTTGTCTTGGTACTTTATTTGTAAgagttgttcatttgttaggcTACTGGTTCAAGGTGCAGCACAATATTAAATGATCAAAGATCTAGTTCAGTCTTGTTAATTAAGCATATTTAAACACAATctcttacctagcttgatgactGTGGGTATTTTTTGCTTACTTTTTGTTGTTCTACATAGAGACAGCTAGAAGGGTCATATTATatttgtgtagaaatgcaggaaataagctttagaTGCCCCCCAAAGTTTGAGGACCCCCAGACACCCGCAAAgttatgtcccccccacttctaaaaccaaagttgcgcccctgtgtTCGCACATGATAGGAATTTGCGTCAGCGTCTCACTAAAGGTCGTAGTACAAGGACtgaggacacacaggaacacgtACACACATAGTGATGTATTACATCATATATCTCAGGGTATATAAGCTGTGTTCTTCCTAATGGAAGTAGAAAAACATTTCTGCACTGAAGCTGGTTTTTGTTTCCTTGTTGCGATCTATTTTTGCAACTTGTATTGTGCTCTTATTTTCACAAACTACTAGGGGTTATTTCTGGATAATGCCACTGACTCTAGTCTAGCAAATACGGTGCTGACCATTTAATTGCACAGGGTTGGAAAGGGATTTGTTTTACAGGAGGCAGTTTCTAGCATTCTATCATACTCAGGTATAAATCTGTATCAGGCCGTATAGGTTGTATAGGCAATATTGCACATACCTGTATTATTGAAGATAGCTTATATCTTTTTGAGCAGGTATGGCAGTGAGGTGGTGTTCCTTTGGGTTTGTGTTGTTGGTAGTGTTCGCATGTTGTGCTGATGCACAGCCTAACTTGAGGTTTCCTTCGTACAACAACCCCCAACCCCAAATTACAACCTCCACGCCTAGACAGCCCCAATGGCCAGAGCCCCAGTGGCCACAGCTGCAGACTCCCCAAAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCCCCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCACCAGAGGTCAGAGCCCCAGGGACCACAACTACAGACTCTCCAGAGGCCAGAGACCCAGAGGCCACAGCTGCAGACTCCCCAGATGCCACAGCTGCAGACTTCTCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCAGAGACCAGAGCCCCAGAGACCACAACTACAGACTCTCCAGAGACCAGAGCCCCAGAGGCCACAGCAGCAGACTCCCCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACCCCCCAGAGACAAGAGCCCCAGGGGCCACAGCAGCAGGCTCCCCAGAGGCCAAAGCAGCAGACATCCCAGAGACCAGAGCCCCAGGGGCCACAGCTGCAGACTCCCCTGAGACCACTGCACCAGTGGCCACAGCTGCAGACTCCTCAGAGGCCACAGCAGCAGACTCATCAGAGACCAGAGCCCCAGGGGCCACAGCAGCAGACTCATCAGAGACCAGAGCCCCAGTGGCCACAGCTGCAGACTCCTCAGAGGCCACAGCAGCAGACTCCTCAGAGGCCAGATCACCAGGGGCCACAGCTACAGACTCCCCAGCGGCATGAGCCCCAGTGGCCACAGCTACAGACTCCCCAGAGACCAGATCACCAGAGGCCACAGCAGCAGACTCCCCAGAGGCATGAGCCCCAGTGGCCACAGCTACAGACTCCCCAGAGACCAGCTCACCAGAGGCCACAGCAGCAGACTCCCCAGAGACCAGTGATCCAGGGACCACAGCAGCAGACTACTCAGAGGCCAGTGATCCAGTGGCCACAGCAGCAGACTCCCCAGAGACCAGAGCCCCAGTGGCCACAGCAGCAGACTCCCCAGAGGCAAGAGCCACATGGGCCACAGCAACAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAGCAGACTCCTCAGAGGCCAGTAATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAACAGACTCCTCAGAGACCAGTGATCCAGGGGCCACAGCAACAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAGCAGACTCCTCAGAGGCCAGTGATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAACAGACTCCTCAGAGACCAGTGATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCAGCAGTAACCCAAACTCCAGATCAGAGATGTCAAGTACCGGTTCGGGATACAGTGCAATGTGGAACCCCAGATATTACTCCATCTCAATGTCAGGCTATCTACTGCTGCTTCAATGGACAGCAGTGCTACTATGGGAAGGCAGTGACTGTGCAGTGTACCAGGGATGCtcagtttgtggtggtggtggccaGGGATTCCACTTGGCCCAAAATAGACATTGATTCCATCAGTCTGTTGGGGGGAAATGACCGCCCCTGCAGTCCTGTTGGCATCACTTCAGCCTTCGCCATATACCAGTTCCCTGTCACTGCCTGTGGCACCACTATAAAGGAGGAAAGTGGTTATGTGGTTTACGAGAACAGGATGGCATCTTCCTATAACGTGGGGGTGGGACCTCGAGGCTCTATCACCAGGGACAGCCATTTTGAGCTCCTGTTCCAGTGTAAGTACTCTGCCACTGCAGTAGAGGCTCTGGTTACTGAGGTGAACACTGTTCCTGCACCCGCTCCTGTTGCTGCTCCGGGACCCCTCAGAGTGGAACTGAGACTGGCCAAAGGAACATGCGACACCAAGGGGTGTAATGACGAGTCGAGATCCTTCACGTTGTATTACACTGAGGAAGACTACCCCATCACTAAAGTCTTGAGGCAGCCTGTGAACGTTGAGGTTCGCATCCTGGAGAGGAAGGATCCCAACCTGTTCCTGATGCTGGAGCACTGCTGGACCACCTCTGACCCCAGCCCTGTCAGCATGCCCCAGTGGGATCTCATCATTGAAGAttgTTCCTACCCGAATGATAATTACCTGACCACCATGGTCCCTGTGGAACATTCCTCTGGCCTTCTGTACCCCAACCACTACAAACGCTTTACCCTCGAGATGTTCACCTTTGTGGATCACACTCTGTCTCCCCAGAAAGAGCGGATTTTCATCCACTGTAGTACCTCTGTGTGCTACCCTACTCCAGGGGTCTCCTGTGAACCGAAATGCAACAGGCAAAGGAGAGATGTTGCTGCTGCTCAGAGGAAGACtatacagaatgctgtggtcTCCAGTGGAGAAGTGATCCTGGTTGACAAAAAGCCTGTCTCCCCTTCAGACCACTAATTCAACCAGCTACAGTTTGTAATGGGGTATGAAATAATGTACTCTGTACTTCCATACCTGTTACAGCAGAGGTATTGAAAGGCATTTTTCTTGCCGATACTTTCTTTGTTCTTGATTTGGAAGAAACTTGTCTCTTATAAACGTCCGTGTCCAGTTGCCAGTGGTACTCCAAAAAATCTGAGAATATTCAGAAAGATATTAAATCCACTTTTTGCACAGAGTGAGAGGTGGCCTCCTGATTTTAGCTGCCAGACATCTTGCATTTTCCAACATCTTTGCAGGAACTAGTCGTTTCTATGCGACGTGGCTGACAGCATGTCACAGAGTGCGTCCAAAACAAAGATCTATACACGTGCAAGAGGCGTTTCTCAATCTATGCAAATTGTGGATATAATAATTTTCTGAatattctctcttttttttttagttCCACTTGCAACTAGACACAGAAGTGCGCTACTCCAGGCATTTCCTACATACACTGGAACCTTTCGAACCAATAACGAAGAAAGTATCACCAAGTAAAGGTTTGTTGGAAATATCCCGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGCTATGTATGTATTGTTTCTAATAAACAGTTGTACCACAAAGTTGG
>XM_036966870.1
ggggagaaaaaaggggtaaaatttaatAAAAAAACAAGTTGTCTTGGTACTTTATTTGTAAgagttgttcatttgttaggcTACTGGTTCAAGGTGCAGCACAATATTAAATGATCAAAGATCTAGTTCAGTCTTGTTAATTAAGCATATTTAAACACAATctcttacctagcttgatgactGTGGGTATTTTTTGCTTACTTTTTGTTGTTCTACATAGAGACAGCTAGAAGGGTCATATTATatttgtgtagaaatgcaggaaataagctttagaTGCCCCCCAAAGTTTGAGGACCCCCAGACACCCGCAAAgttatgtcccccccacttctaaaaccaaagttgcgcccctgtgtTCGCACATGATAGGAATTTGCGTCAGCGTCTCACTAAAGGTCGTAGTACAAGGACtgaggacacacaggaacacgtACACACATAGTGATGTATTACATCATATATCTCAGGGTATATAAGCTGTGTTCTTCCTAATGGAAGTAGAAAAACATTTCTGCACTGAAGCTGGTTTTTGTTTCCTTGTTGCGATCTATTTTTGCAACTTGTATTGTGCTCTTATTTTCACAAACTACTAGGGGTTATTTCTGGATAATGCCACTGACTCTAGTCTAGCAAATACGGTGCTGACCATTTAATTGCACAGGGTTGGAAAGGGATTTGTTTTACAGGAGGCAGTTTCTAGCATTCTATCATACTCAGGTATAAATCTGTATCAGGCCGTATAGGTTGTATAGGCAATATTGCACATACCTGTATTATTGAAGATAGCTTATATCTTTTTGAGCAGGTATGGCAGTGAGGTGGTGTTCCTTTGGGTTTGTGTTGTTGGTAGTGTTCGCATGTTGTGCTGATGCACAGCCTAACTTGAGGTTTCCTTCGTACAACAACCCCCAACCCCAAATTACAACCTCCACGCCTAGACAGCCCCAATGGCCAGAGCCCCAGTGGCCACAGCTGCAGACTCCCCAAAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCCCCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCACCAGAGGTCAGAGCCCCAGGGACCACAACTACAGACTCTCCAGAGGCCAGAGACCCAGAGGCCACAGCTGCAGACTCCCCAGATGCCACAGCTGCAGACTTCTCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACTCAGAGACCAGAGCCCCAGAGACCACAACTACAGACTCTCCAGAGACCAGAGCCCCAGAGGCCACAGCAGCAGACTCCCCAGAGACCAGAGCCCCAGAGGCCACAGCTGCAGACCCCCCAGAGACAAGAGCCCCAGGGGCCACAGCAGCAGGCTCCCCAGAGGCCAAAGCAGCAGACATCCCAGAGACCAGAGCCCCAGGGGCCACAGCTGCAGACTCCCCTGAGACCACTGCACCAGTGGCCACAGCTGCAGACTCCTCAGAGGCCACAGCAGCAGACTCATCAGAGACCAGAGCCCCAGGGGCCACAGCAGCAGACTCATCAGAGACCAGAGCCCCAGTGGCCACAGCTGCAGACTCCTCAGAGGCCACAGCAGCAGACTCCTCAGAGGCCAGATCACCAGGGGCCACAGCTACAGACTCCCCAGCGGCATGAGCCCCAGTGGCCACAGCTACAGACTCCCCAGAGACCAGATCACCAGAGGCCACAGCAGCAGACTCCCCAGAGGCATGAGCCCCAGTGGCCACAGCTACAGACTCCCCAGAGACCAGCTCACCAGAGGCCACAGCAGCAGACTCCCCAGAGACCAGTGATCCAGGGACCACAGCAGCAGACTACTCAGAGGCCAGTGATCCAGTGGCCACAGCAGCAGACTCCCCAGAGACCAGAGCCCCAGTGGCCACAGCAGCAGACTCCCCAGAGGCAAGAGCCACATGGGCCACAGCAACAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAGCAGACTCCTCAGAGGCCAGTAATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAACAGACTCCTCAGAGACCAGTGATCCAGGGGCCACAGCAACAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAGCAGACTCCTCAGAGGCCAGTGATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCACAGCAACAGACTCCTCAGAGACCAGTGATCCAGGGGCCACAGCAGCAGACTCCCCAGCGGCCAGAGTCCCAGTGGCCAGCAGTAACCCAAACTCCAGATCAGAGATGTCAAGTACCGGTTCGGGATACAGTGCAATGTGGAACCCCAGATATTACTCCATCTCAATGTCAGGCTATCTACTGCTGCTTCAATGGACAGCAGTGCTACTATGGGAAGGCAGTGACTGTGCAGTGTACCAGGGATGCtcagtttgtggtggtggtggccaGGGATTCCACTTGGCCCAAAATAGACATTGATTCCATCAGTCTGTTGGGGGGAAATGACCGCCCCTGCAGTCCTGTTGGCATCACTTCAGCCTTCGCCATATACCAGTTCCCTGTCACTGCCTGTGGCACCACTATAAAGGAGGAAAGTGGTTATGTGGTTTACGAGAACAGGATGGCATCTTCCTATAACGTGGGGGTGGGACCTCGAGGCTCTATCACCAGGGACAGCCATTTTGAGCTCCTGTTCCAGTGTAAGTACTCTGCCACTGCAGTAGAGGCTCTGGTTACTGAGGTGAACACTGTTCCTGCACCCGCTCCTGTTGCTGCTCCGGGACCCCTCAGAGTGGAACTGAGACTGGCCAAAGGAACATGCGACACCAAGGGGTGTAATGACGAGTCGAGATCCTTCACGTTGTATTACACTGAGGAAGACTACCCCATCACTAAAGTCTTGAGGCAGCCTGTGAACGTTGAGGTTCGCATCCTGGAGAGGAAGGATCCCAACCTGTTCCTGATGCTGGAGCACTGCTGGACCACCTCTGACCCCAGCCCTGTCAGCATGCCCCAGTGGGATCTCATCATTGAAGAttgTTCCTACCCGAATGATAATTACCTGACCACCATGGTCCCTGTGGAACATTCCTCTGGCCTTCTGTACCCCAACCACTACAAACGCTTTACCCTCGAGATGTTCACCTTTGTGGATCACACTCTGTCTCCCCAGAAAGAGCGGATTTTCATCCACTGTAGTACCTCTGTGTGCTACCCTACTCCAGGGGTCTCCTGTGAACCGAAATGCAACAGGCAAAGGAGAGATGTTGCTGCTGCTCAGAGGAAGACtatacagaatgctgtggtcTCCAGTGGAGAAGTGATCCTGGTTGACAAAAAGCCTGTCTCCCCTTCAGACCACTAATTCAACCAGCTACAGTTTGTAATGGGttCCACTTGCAACTAGACACAGAAGTGCGCTACTCCAGGCATTTCCTACATACACTGGAACCTTTCGAACCAATAACGAAGAAAGTATCACCAAGTAAAGGTTTGTTGGAAATATCCCGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGATTACAGCAAGACAGCAGCTCAGACACAAACTGTAACTCTATATGGTTATAATACAACATGGGCTCCTGATTTTGCTATGTATGTATTGTTTCTAATAAACAGTTGTACCACAAAGTTGG

Function

NR:

description
uncharacterized protein LOC109886054

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590179.2 False 4347 mRNA 0.50 8 4372797 4378889
XM_036966870.1 True 3946 mRNA 0.51 9 4372797 4378889

Neighbor

gene id symbol gene type direction distance location
LOC110508372 LOC106600555 coding upstream 29359 4339154 ~ 4343438 (+)
LOC110508371 LOC106600556 coding upstream 34409 4289317 ~ 4338388 (+)
LOC110508370 LOC106600557 coding upstream 92671 4260707 ~ 4280126 (+)
LOC118944845 NA coding upstream 400752 3970352 ~ 3972045 (+)
LOC100653486 LOC106600564 coding upstream 557907 3797542 ~ 3814890 (+)
trnas-uga-85 NA coding downstream 7838 4386727 ~ 4386808 (+)
LOC110508375 LOC106600551 coding downstream 116164 4495053 ~ 4526091 (+)
LOC110509199 LOC106600550 coding downstream 165399 4544288 ~ 4547478 (+)
LOC110508377 gid8 coding downstream 297677 4676566 ~ 4679451 (+)
slc17a9b LOC106600547 coding downstream 303610 4682499 ~ 4714289 (+)
G2096924 NA non-coding upstream 12052 4360505 ~ 4360745 (+)
G2096906 NA non-coding upstream 15820 4355891 ~ 4356977 (+)
G2096904 NA non-coding upstream 17486 4353146 ~ 4355311 (+)
G2096907 NA non-coding upstream 23003 4349516 ~ 4349794 (+)
G2096921 NA non-coding upstream 28232 4344262 ~ 4344565 (+)
G2096945 NA non-coding downstream 10436 4389325 ~ 4389595 (+)
G2096947 NA non-coding downstream 12776 4391665 ~ 4391870 (+)
G2096948 NA non-coding downstream 13024 4391913 ~ 4392403 (+)
G2096949 NA non-coding downstream 13877 4392766 ~ 4393020 (+)
G2096950 NA non-coding downstream 14870 4393759 ~ 4393999 (+)
G2096472 NA other upstream 454812 3899586 ~ 3917985 (+)
G2096475 NA other upstream 464926 3887380 ~ 3907871 (+)
G2095895 LOC106600579 other upstream 1031278 3341184 ~ 3341519 (+)
yeats2 yeats2 other upstream 1465592 2900784 ~ 2969598 (+)
G2094884 NA other upstream 1717706 2653863 ~ 2655091 (+)
G2097031 NA other downstream 157187 4536076 ~ 4536894 (+)
G2098625 NA other downstream 1589672 5968561 ~ 5998314 (+)
G2098849 NA other downstream 1710839 6089728 ~ 6090062 (+)
LOC110509204 prpf6 other downstream 1744839 6123728 ~ 6157102 (+)

Expression


Co-expression Network