LOC110508376 (LOC106600548)


Basic Information

Item Value
gene id LOC110508376
gene name LOC106600548
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 4623312 ~ 4642689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588873.2
TGACGATGCAGGGAGAGCAGATTATGAAGGGGAGCTCACCAGCAGCAGTCTCCTCTCATTGTCTCAATGGCTGCACACGCATTCCTCTTCTCTGCCTTACTGTCTGCCCTCAGCCAGCCCACCCTGTCCTTAGATCAAGTGCCTGCACTCCTGGAGAGAAGcACAGAAGAGGACTACGTTACAGAGGTTCCATACCCAGCtgggagaatcagagcagGTGGTCTTGATGGAATGAGCTTGGAGACTCAGGGTTATGTGCCCACTAAAGAAACCCCACTCAGAAGATTACTGAAGCTGCATGGCTGGCACCTCCTCAACCAGCATGGCCATGGCAAGGGCAAGAGAAAGCTGCTCCAGTCCCCCATCCACGGGCCCTACTCTCCCCTGAGCGTGGCCTACAATGGCAAGACCTGCATCCTTTTCAAGGCCAAGCGCCTGGCCATCCGCTACCAGAACCACACATTCGTAGACCTGACGGAGAGGACCTTTGGACCCAATGCCCCTGTGGACACCAAGGGTTCCATCTGCACCAAGGAGAAGGCTACGCTCTCGCTAAAGTTTGGAGATGTGGAGGATCTCAGGGGACTTGTTATCAGGCTGCAGATGTCCAACATTTTCTATGAGTCAGCAGGGCAGAACTGGTTCACCTTAGACAGCGTCCACATCCACTACAATTGGACCCATGAAGCTACGTTCAACGCCAGTGAGGTGTACGCCCCCGCCACCTCCTCCTACCACTGCCAGCATGTCAGCAGTCAGCACAAATATGACACCCTTCTGGTGCCCAGCTCACACACCGACACCTCAGCTAACTGGCACATCACGTTTACTGACTTCCAGATCCAGGCGTTCAACGTCATGTCTGATAAGTTTGCGTCTGCCAGTGACTGTGCCAACTTCCTGACCCCAGCCATCCTGATGGGCCTGGTGACCTCTCTGATCCTGCTGTTGGTCCTGGCCTATGCTCTGCACATGGTGGTCCACCTAAAACACATTGACCGCTACGAGGAACAGAAAGCTATGGTGTACTTCCCACGCAGGCTGAGCAAAGCTCTAGAATGCAGAGCCTCACAGCAGTGCGAGTTACCTGACAAGAACTGCCtgtgagagatggaggaagaaagagtgagaagaTGAAGAGGGGGATGCTGCCAAATGCAAGAGTGGGAAGATGAAGAGGGGGATGCTGCCAAATGCAAGAGTGAGaagatgaaggggggggggggtgctgccaAATGCAAGAGTGAGAAAGTATCACCCACACAGTTTTCCACGCTTCCAAATGTTTGTTTACTAGTGGCAACTATTTTGACCTGTTGGCTTTTGTAATTTCTCGATATGTAAGATCAACACATTTGACATGTTCTTACTTCTAAGCTATCACATTTTTTTGGAGCATTAAAACaaataatttttttaattgaCCTGAACACACATTAATATCCTACGTAAAGATTATTGGATGTTAAACCCTCTTGATggtggggttagaggtcaggaaGAGACCAGGGGCCCAGGATGGTCACAGTGTCCCCAGGATTTCACTTGAGCACCTGAATCAACAGTTAACGACTGCAGCTAACCCTGCCATTGTCCAAGCCTGCTAAGCGGCCTTCACTATTTGGCATAACTAGACTTTGGTGTGTTGAGTCCCCACTCTCCATCGCTAGCCTTGACACATTGCCAAATTCACTAGCTCATCTTCAATACCAGCACGAGGAATCTTTTTAAGTTGAATTAGATGGTTTAGCACATTATTTCTAAAGTGGTGTGTGTGAGGATCCACTGGTAGATCACTGACAAATCTTCTTGGGTGAAGATAGTGCTTGAGCTGGAAACTTGTTTGGAATATCTGGAGGGTATCTCATGAATTATAAAGGGCTTTGGTGGGTCATGGAACAAAAccatttgggaaccactggtctggCACTTGGCAGAGGTGAACTGAATTGGTCACTGTGGACCACTGAACCTCTGGGGCGTAGACTTTGGGGACTTACTGTGAAACGGCCTTGAACGGACCAGCAGCCAGTTAGCCTTGAAGGCACTAATGGCTAACTTTCAAAACTAAAGACAAAACACTGCACAAGACTGCCCTTCTGAAGTGAAGCTAAATGATTTGCCATTACACATGGTGAAGGACAGACTGTGATAATGTGAAGATGAGAAGTACAgttacaatgtaaaaaaacaaacaaaaaaacactcaaaTGTACAGATGTATCTCTCAGCtgtcttttttttacagtttaATCAATAAATCCTATTATGTACAGGAAGGCTATTCTACTCCTCATAATCACAAAGATATACAGTTCTGGTCTGTATATGATCGTAACTGTTTACTATTTTCAGTTAGAGCACACTTGCTTagacggaacccaaaccggctgcgctcGTGTgtcatcgtgcataaatgtattttgtccccccacaccaaacgcgatcacgacacacag

Function

NR:

description
V-type proton ATPase subunit S1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588873.2 True 2459 mRNA 0.48 6 4623312 4642689

Neighbor

gene id symbol gene type direction distance location
trnas-uga-107 NA coding downstream 26214 4597014 ~ 4597098 (-)
trnas-uga-106 NA coding downstream 27410 4595816 ~ 4595902 (-)
trnas-uga-105 NA coding downstream 31250 4591981 ~ 4592062 (-)
trnas-uga-104 NA coding downstream 32584 4590647 ~ 4590728 (-)
trnas-uga-103 NA coding downstream 39227 4584004 ~ 4584085 (-)
LOC110508381 LOC106600608 coding upstream 193774 4836463 ~ 4838186 (-)
LOC110508206 LOC106600546 coding upstream 437976 5080665 ~ 5092413 (-)
LOC110508383 LOC106566591 coding upstream 473058 5115747 ~ 5247705 (-)
zbtb46 LOC106600540 coding upstream 875650 5518339 ~ 5752210 (-)
LOC110508393 LOC106600538 coding upstream 1223430 5866119 ~ 5952354 (-)
G2097312 NA non-coding downstream 2544 4620557 ~ 4620768 (-)
G2097300 NA non-coding downstream 23435 4599677 ~ 4599877 (-)
G2097296 NA non-coding downstream 39952 4562492 ~ 4583360 (-)
G2097291 NA non-coding downstream 73243 4549809 ~ 4550069 (-)
G2097283 NA non-coding downstream 85746 4537340 ~ 4537566 (-)
G2097472 NA non-coding upstream 9092 4651781 ~ 4652595 (-)
G2097483 NA non-coding upstream 17080 4659769 ~ 4660043 (-)
G2097478 NA non-coding upstream 25773 4668462 ~ 4676885 (-)
G2097477 ct011 non-coding upstream 34728 4677417 ~ 4679443 (-)
G2097480 NA non-coding upstream 60943 4703632 ~ 4706461 (-)
G2097165 NA other downstream 298335 4324474 ~ 4324977 (-)
G2096731 NA other downstream 672291 3949337 ~ 3951021 (-)
G2096732 NA other downstream 675687 3947275 ~ 3947625 (-)
G2096163 NA other downstream 1313638 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 2715900 1906907 ~ 1907412 (-)
G2098765 NA other upstream 1302450 5945139 ~ 5946875 (-)
G2098763 NA other upstream 1304446 5947135 ~ 5949100 (-)
G2098766 NA other upstream 1305049 5947738 ~ 5949613 (-)
G2098793 NA other upstream 1353136 5995825 ~ 5999494 (-)

Expression


Co-expression Network