LOC110508381 (LOC106600608)


Basic Information

Item Value
gene id LOC110508381
gene name LOC106600608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 4836463 ~ 4838186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588878.2
GAGGGCAAGAAGCACACAAGGACCCGTCAAGGAGGCCAACGCTCCAGTCTCTCACCCAGGCCACTATTTACGTGCGTTTAATGTCGCTTCGTAAAACACACAATTACAGAAGCGTTTTAAACGTATATGCGCGCAGGGGGAACGTTAAGTGGGGCTGAATACAGTCCATTCACTGCAACTGTTCTGAAGAGCCACAAAGAAAGTGTGTTGAGAAGGACTCGAGTTGTGTGCGAACCCTCTCCACAAAAAAATACCGACACGGAGGAAGAGGATAAATTAAGTTTCGACCGAACTGCATTTTGTATTAATCGTTATTGTGGAAGAGAAAATGAATGCCGGAGAAGAGAATCTGCTGAAGTCCATCAGCAACGACACTTTACTGGACCTGACGCAGCGATACGGCCAGTCCGCCTTCGGCTTTGGACCTGGCCACATTACTGGAAGTCCTGGAGGGCGATATCCTCTCACACCGGCCGCAGACTTCCTCTCGGGTCAGACGGGCAAGTCCAACGAAAGTGGCGGGGAGCAGACCAGTGATGACGATGACGACCGTTTCGACCCTCTGGACCCCCGGAAGAGGGGTTCCGCATTCGACGATGACAAACACGGGGGTCCTCTTTCCAAGAAGCCCAAAGAGCAGCGGTCTCTGCGCCTGAGCATCAATGCGCGCGAGAGGAGACGGATGCACGACCTGAACGACGCACTGGACGGCCTCCGTTCTGTGATCCCGTATGCGCACAGCCCGTCAGTGAGGAAACTCTCCAAAATAGCCACTCTCCTCCTGGCAAAGAACTACATCCTCATGCAGGCTCAGGCTCTGGAGGAGATGAGGCGGCTGGTGGCTTATCTGAACCAGGGACAGAGCATCACCTCGCCCATCCCCACCCCCATTGCACCATTTGGACAGGCTGCCGTATACCCCTTCACGGGCTCGGCACTCGCCACCTGCGCGGAGAAATACTCGGGGACACCTGCAAGTCTCTTTAAGCAACATAACGACAAGCCTTGTTAACGTTTTATTTGTATAGCCTATACCTGAACTTCACCCACTTGTATCCAAGTCTAATGCGTAAATCCTAAAATAAATAACTGCTGTGATGTTTCATCcagattaataaaaaataaaaaaaaacatgaaaaactacacTGGTGTTTAGTAaggctagattagggttggagctgGCAAATTGCTGTTTAAAAGTGTTTCTCTATACTCTCCTCAGAGTTAAAGGAATTGTATTGCTGTGGCAGTGTCTGACCATGTTTTAATTGACAGTTTGACATGTTATGTGTGACTATAAAAACGGCACCCTTGCAAAAGTTTTGAATGATCTATTTCGTATTCTTGTGTAGTCTACAGACCTACTATGCAACATTCAGTGAAACAGAAAATAACGAGAGAGATGACAAGATTGCGTTCCAActtcaatagtttttttttttgcagcacTGTCGTTTATGAATGCACTTTCCCTCATTTTAACAGACGCTATGTGAGGAAACACTAGTGTATGATATTTTTGGAAAATATGTATTGATGATTTTGGTTTTGTTATTGCACAATTCACATGATTGTACAACTGTGGAAAACTACTTGGATCAAAGTACTGTTATGTTATTCGTTTTCAAAAAAACAGCCTTTACAGACTAAACAAATTGGTTGTGTTGCAACATGAATTTCATATATTGTTTATATGTCTTTATAAATAAAACATATCTATGGT

Function

NR:

description
class E basic helix-loop-helix protein 23-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588878.2 True 1724 mRNA 0.45 1 4836463 4838186

Neighbor

gene id symbol gene type direction distance location
LOC110508376 LOC106600548 coding downstream 193774 4623312 ~ 4642689 (-)
trnas-uga-107 NA coding downstream 239365 4597014 ~ 4597098 (-)
trnas-uga-106 NA coding downstream 240561 4595816 ~ 4595902 (-)
trnas-uga-105 NA coding downstream 244401 4591981 ~ 4592062 (-)
trnas-uga-104 NA coding downstream 245735 4590647 ~ 4590728 (-)
LOC110508206 LOC106600546 coding upstream 242479 5080665 ~ 5092413 (-)
LOC110508383 LOC106566591 coding upstream 277561 5115747 ~ 5247705 (-)
zbtb46 LOC106600540 coding upstream 680153 5518339 ~ 5752210 (-)
LOC110508393 LOC106600538 coding upstream 1027933 5866119 ~ 5952354 (-)
LOC110508394 samd10 coding upstream 1130734 5968920 ~ 6071924 (-)
G2097514 NA non-coding downstream 114138 4721769 ~ 4722325 (-)
G2097511 NA non-coding downstream 118312 4712631 ~ 4718151 (-)
G2097510 NA non-coding downstream 125131 4709288 ~ 4711332 (-)
G2097480 NA non-coding downstream 130002 4703632 ~ 4706461 (-)
G2097477 ct011 non-coding downstream 157020 4677417 ~ 4679443 (-)
G2097587 NA non-coding upstream 5485 4843671 ~ 4843879 (-)
G2097684 NA non-coding upstream 88787 4926973 ~ 4927326 (-)
G2097695 NA non-coding upstream 96245 4934431 ~ 4934956 (-)
G2097706 NA non-coding upstream 107945 4946131 ~ 4946364 (-)
G2097707 LOC106582599 non-coding upstream 109580 4947766 ~ 4948033 (-)
G2097165 NA other downstream 511486 4324474 ~ 4324977 (-)
G2096731 NA other downstream 885442 3949337 ~ 3951021 (-)
G2096732 NA other downstream 888838 3947275 ~ 3947625 (-)
G2096163 NA other downstream 1526789 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 2929051 1906907 ~ 1907412 (-)
G2098765 NA other upstream 1106953 5945139 ~ 5946875 (-)
G2098763 NA other upstream 1108949 5947135 ~ 5949100 (-)
G2098766 NA other upstream 1109552 5947738 ~ 5949613 (-)
G2098793 NA other upstream 1157639 5995825 ~ 5999494 (-)

Expression


Co-expression Network