LOC110508206 (LOC106600546)


Basic Information

Item Value
gene id LOC110508206
gene name LOC106600546
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 5080665 ~ 5092413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508206
ATGTCTGCCGCAAGCCTTGACCCTCAGAGGTCAAAGGGACATGCATCTAAAGtgtaAAATGGTTCACTGCATCCGAAGGAGACTGTCCACGACAATGACTTTGAGCCGtacctcactggccaatcaaccCAGAGCAACAGCTACCAGTCCATGACTGACCCCTTCCTGTCCAGCTACTATGCCCCCTCCATCGGCTTCCCCTACCCCCTCACCGAGGCCCCTTGGTCCACCGGCGGAGACCCCCCCCATTCCTTACCTCACCCCCTACGGACCCTTGAGCAATGGAGACCACCACAGTATTTACCCCCATCGTTTTAACTTTTTCCCTGAGAACCCCACCATCTCCACCTGAGGCACCAGTGGCTCCCAGGGCCAGCAGACTCAGAGCTCATACGGGGGTAGCTATAGCTACCCTCCCAGCTCCCTGGGGGCACCCTGGTGCCTGACAGCCAGACAGGCTTCCACAGCGACACCATCAACAAAGCTCCACGCATGAACAGCCTGGAGCAGGGCATGGTGGGCCTAAAAATCGGCATCACAGGCCAGGGGTCAGGGGACAAGGCTGTGGGCTCTGTGATTGGTGGACCGCCGGCGGTGGCGCAGGGGAACGGGGGTACGCCCATCGGTATGCCCCTGCCCAAGCCCACCTCATGAGCGGCCATTGCCAATAAACCGGCCAAGCCCCAGCAGCTGAAGGCCAAGATGAAACCAGGCATGTCCAGCCCTGGGGGAGCCCTGCCCCCTCCACCCATCAAACACAACATGGACATTGGCACCTGGGACAACGAGGGGCCTGTGAATAAAGTGGCCCAAGCCCCCATGCAGCAGAACCCTATGCAGCCCCCTCCCCAGCCCCTGGTGCAGGAGCAGATACAGCCCATGGCCTTACAGCACCAGCACCACCAGCCCCCTCAACCCTACCAGAACCACACCCAAACCCCACCACCCCAGACCCGCTGGGTTGCACCGAGCAACTGTCATTTCGGCTACGGGCAGATAGGGGCCGGAATGGATGGTGGCAGTCCTGCCAGTATGGTACCTGGTGGAGCAGAGAACCACCCGGTGCTGGAGAAGCTGCGTGCAGCTCACAGCTACAACCCCAAGGAGTTTGAGTGGAACCTGAAGAACGGCCGTGTGTTCATCATCAAGAGCTTCTCTGTGGACGACATCCACTGCTCCATCAAGTACTCCAACTGGTGCAGCACCGAGCACGGCAACAAGCGTCTGGACGGGGCCTTCCGGGGCCTCAACTTCAAGGGACCCGTCTACCTGCTGTTCAGTGTCAACGGCAGTGGCCACTTCTGTGGCGTGGCAGAGATGCGCTCGCCCGTGGACTACGGCACTAGCGCTGGCGTGTGGGCGCAGGACAAGTGGAAGGGTAAGTTTGACGTGGACTGGCTGTTTGTGAAGGACGTGCCCAACAGCCAGCTGCGCCACATCCGCCTTGAGAACAACGACAACAAGCCGGTGACCAACTCCCGGGACACCCAGGAAGTCCCTCTGGAGAAGGCCAAGCAGGTGCTGAAGATCATCAAGCACACCACCGCCATCTTCGATGACTTCTCCCACTATGAgaagaggcaggaggaggaggtgggttaGATACACTGGTCTGGTTAAGTCCATCCACTCCGGATGCTAAACAACCTCTCATAAAGTTGGATTGATGTTTACCTGTTTCAAAGGCTGTCATCTGAAACAGGTAAAAGACATTTGATTAATTGACATTGTTTTGTCGTTTGTCATCTTGGTGAATATGAAATGGTATGCCTATCATGATCCGTTTAGAGCCTATCGTATCCCTTCAACAGATGTCCATAAGAAGTTGTTTTATATACTgccacctcttcttctctccctctactcctgCTGTCAGGTGTTTGAGCCACCTGCACCCATCCAGAACCGAACTTGAC

Function

NR:

description
PREDICTED: YTH domain-containing family protein 1-like isoform X1

GO: NA

KEGG:

id description
K20102 YTHDF; YTH domain-containing family protein

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508206 True 1916 mRNA 0.57 5 5080665 5092413

Neighbor

gene id symbol gene type direction distance location
LOC110508381 LOC106600608 coding downstream 242479 4836463 ~ 4838186 (-)
LOC110508376 LOC106600548 coding downstream 437976 4623312 ~ 4642689 (-)
trnas-uga-107 NA coding downstream 483567 4597014 ~ 4597098 (-)
trnas-uga-106 NA coding downstream 484763 4595816 ~ 4595902 (-)
trnas-uga-105 NA coding downstream 488603 4591981 ~ 4592062 (-)
LOC110508383 LOC106566591 coding upstream 23334 5115747 ~ 5247705 (-)
zbtb46 LOC106600540 coding upstream 425926 5518339 ~ 5752210 (-)
LOC110508393 LOC106600538 coding upstream 773706 5866119 ~ 5952354 (-)
LOC110508394 samd10 coding upstream 876507 5968920 ~ 6071924 (-)
LOC110508207 LOC106600653 coding upstream 988549 6080962 ~ 6081721 (-)
G2097873 NA non-coding downstream 768 5079659 ~ 5079897 (-)
G2097869 NA non-coding downstream 5553 5074833 ~ 5075112 (-)
G2097868 NA non-coding downstream 7241 5071567 ~ 5073424 (-)
G2097833 NA non-coding downstream 24018 5053740 ~ 5056647 (-)
G2097832 NA non-coding downstream 28009 5051819 ~ 5052656 (-)
G2097877 NA non-coding upstream 6355 5098768 ~ 5098986 (-)
G2097882 NA non-coding upstream 11138 5103551 ~ 5103765 (-)
G2097884 NA non-coding upstream 13196 5105609 ~ 5105837 (-)
G2097991 NA non-coding upstream 96771 5189184 ~ 5190222 (-)
G2098035 NA non-coding upstream 157166 5249579 ~ 5249784 (-)
G2097165 NA other downstream 755688 4324474 ~ 4324977 (-)
G2096731 NA other downstream 1129644 3949337 ~ 3951021 (-)
G2096732 NA other downstream 1133040 3947275 ~ 3947625 (-)
G2096163 NA other downstream 1770991 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 3173253 1906907 ~ 1907412 (-)
G2098765 NA other upstream 852726 5945139 ~ 5946875 (-)
G2098763 NA other upstream 854722 5947135 ~ 5949100 (-)
G2098766 NA other upstream 855325 5947738 ~ 5949613 (-)
G2098793 NA other upstream 903412 5995825 ~ 5999494 (-)

Expression


Co-expression Network