LOC110508383 (LOC106566591)


Basic Information

Item Value
gene id LOC110508383
gene name LOC106566591
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 5115747 ~ 5247705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966655.1
cacacgcaccggCGTGAAATCCAACTACTCAACTCGAAAGCTAGCGGTAGAATCAACCCAAGCCACCCCTTCATACACAAAGCAATCATTGGGGGACATAAAAGGCATGGGGTGGTGGAGCCTGCAGCGTACCTACGCAGTTTTCAAAGTGGACCGAGCTTGAAGCCATTCCTTGTATTTAAAGGTATCCggatatctagtgacccagtgtAGACCGTTCTACGGACATTTCCTTGCCGTTTCTCGAGTGATATTTTGTTTTTGGCACAATGGGGTGCTGCAGCGGCCGATGCACGCTCATCTTTCTCTGCTCGATTCAGCTGATCGTGGCGTTGGAGAGGCAGGTTTTTGACTTCCTGGGATACCAATGGGCGCCCATTCTGGCCAACTTCTTCCACATCATCATTGTCATCCTCGGCTTCTTCGGCACTATACAGTACCGACCACGCTACATTGTAGTGTACACAGTGTGGACAGCTCTCTGGGTGGCCTGGAATCTCTTCATCGTCTGTTTCTACCTGGATGTGGGAGGCCTGACCAAGGAAAGTGACCTGCTGACGTTTGACATCTCGGCTCACCACTCGTGGTGGAGGGAGCACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGTGGTGGGCACCGTGGACAGCCAGTCTTACATCTCTGTCATGGGCTGTCTCATAGAGTACCAGTACATAGAGATCCTACACAGTGCAACACAGATCCTCATCGCTcTCCTGGGCTTCGTGTACGCCTGCTACGTCATTAGCGCCATCACTGAGGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCTCTCTACCATGTCAATGAGAAACCATCCCACCTCCTCTTAAAGCCCATGTACCTGTCTACGTAAATAGGGCAGAAGGCAACATTGCAGTTTCCGATGGAAACAAAGTGGCTGCTCTGACTGACACAACAACCGTCCGAGAATTCACTGGGGCAGGCCAGACATTCCTCTGGTTCTCTACATCTCTTCAGTCCTTCAAACATGTAAATTACTGGTGCTCTGCTTAAGGATGACTGTACTTCCCAGTTCTGTTGttagtgggagggaaggagaggatagggtTGGGGGATGGGGAGGGGGTAATTACAGTGTAACATGGGCCTGATCTCTTACTGTGtactcaaatataaattataaatTATAAATTAACTACAAACGGCATCCGACAACAGAGACGTACAGTACCTGCTGTCAATGGCTGTATTTCTGTCCATTGTTCTATCAGAACTAGTGATCTATCTATAGATCATAGctataaatacagtaccagtcaaaagtttggacacaccattcaaggggttttctttattactattttctacattgcagcaTAAAAGTGAAAACATCGAcgctttgaaataacacatatggaatcaattagtagccagcctttgccttgatgacagctttgcacactctcacattctc
>XM_036966657.1
cacacgcaccggCGTGAAATCCAACTACTCAACTCGAAAGCTAGCGGTAGAATCAACCCAAGCCACCCCTTCATACACAAAGCAATCATTGGGGGACATAAAAGGCATGGGGTGGTGGAGCCTGCAGCGTACCTACGCAGTTTTCAAAGTGGACCGAGCTTGAAGCCATTCCTTGTATTTAAAGGTATCCggatatctagtgacccagtgtAGACCGTTCTACGGACATTTCCTTGCCGTTTCTCGAGTGATATTTTGTTTTTGGCACAATGGGGTGCTGCAGCGGCCGATGCACGCTCATCTTTCTCTGCTCGATTCAGCTGATCGTGGCGTTGGAGAGGCAGGTTTTTGACTTCCTGGGATACCAATGGGCGCCCATTCTGGCCAACTTCTTCCACATCATCATTGTCATCCTCGGCTTCTTCGGCACTATACAGTACCGACCACGCTACATTGTAGTGTACACAGTGTGGACAGCTCTCTGGGTGGCCTGGAATCTCTTCATCGTCTGTTTCTACCTGGATGTGGGAGGCCTGACCAAGGAAAGTGACCTGCTGACGTTTGACATCTCGGCTCACCACTCGTGGTGGAGGGAGCACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGTGGTGGGCACCGTGGACAGCCAGTCTTACATCTCTGTCATGGGCTGTCTCATAGAGTACCAGTACATAGAGATCCTACACAGTGCAACACAGATCCTCATCGCTcTCCTGGGCTTCGTGTACGCCTGCTACGTCATTAGCGCCATCACTGAGGAGGAAGACAGCTGTCTACGTAAATAGGGCAGAAGGCAACATTGCAGTTTCCGATGGAAACAAAGTGGCTGCTCTGACTGACACAACAACCGTCCGAGAATTCACTGGGGCAGGCCAGACATTCCTCTGGTTCTCTACATCTCTTCAGTCCTTCAAACATGTAAATTACTGGTGCTCTGCTTAAGGATGACTGTACTTCCCAGTTCTGTTGttagtgggagggaaggagaggatagggtTGGGGGATGGGGAGGGGGTAATTACAGTGTAACATGGGCCTGATCTCTTACTGTGtactcaaatataaattataaatTATAAATTAACTACAAACGGCATCCGACAACAGAGACGTACAGTACCTGCTGTCAATGGCTGTATTTCTGTCCATTGTTCTATCAGAACTAGTGATCTATCTATAGATCATAGctataaatacagtaccagtcaaaagtttggacacaccattcaaggggttttctttattactattttctacattgcagcaTAAAAGTGAAAACATCGAcgctttgaaataacacatatggaatcaattagtagccagcctttgccttgatgacagctttgcacactctcacattctc
>XM_036966656.1
cacacgcaccggCGTGAAATCCAACTACTCAACTCGAAAGCTAGCGGTAGAATCAACCCAAGCCACCCCTTCATACACAAAGCAATCATTGGGGGACATAAAAGGCATGGGGTGGTGGAGCCTGCAGCGTACCTACGCAGTTTTCAAAGTGGACCGAGCTTGAAGCCATTCCTTGTATTTAAAGGTATCCggatatctagtgacccagtgtAGACCGTTCTACGGACATTTCCTTGCCGTTTCTCGAGTGATATTTTGTTTTTGGCACAATGGGGTGCTGCAGCGGCCGATGCACGCTCATCTTTCTCTGCTCGATTCAGCTGATCGTGGCGTTGGAGAGGCAGGTTTTTGACTTCCTGGGATACCAATGGGCGCCCATTCTGGCCAACTTCTTCCACATCATCATTGTCATCCTCGGCTTCTTCGGCACTATACAGTACCGACCACGCTACATTGTAGTGTACACAGTGTGGACAGCTCTCTGGGTGGCCTGGAATCTCTTCATCGTCTGTTTCTACCTGGATGTGGGAGGCCTGACCAAGGAAAGTGACCTGCTGACGTTTGACATCTCGGCTCACCACTCGTGGTGGAGGGAGCACGGTCCagggtgtgtgaggagagagatgaCCCAGCCAGTGGTGGGCACCGTGGACAGCCAGTCTTACATCTCTGTCATGGGCTGTCTCATAGAGTACCAGTACATAGAGATCCTACACAGTGCAACACAGATCCTCATCGCTcTCCTGGGCTTCGTGTACGCCTGCTACGTCATTAGCGCCATCACTGAGGAGGAAGACAGCTTTGATTTTGTTGGTGGATTTGACCCCTTCCCTCTCTACCATGTCAATGAGAAACCATCCCACCTCCTCTTAAAGCCCATGTACCTGTaa

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3-like

GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966655.1 False 1478 mRNA 0.48 7 5115747 5247705
XM_036966657.1 False 1393 mRNA 0.48 6 5115747 5247705
XM_036966656.1 True 890 mRNA 0.52 6 5118953 5247705

Neighbor

gene id symbol gene type direction distance location
LOC110508206 LOC106600546 coding downstream 23334 5080665 ~ 5092413 (-)
LOC110508381 LOC106600608 coding downstream 277561 4836463 ~ 4838186 (-)
LOC110508376 LOC106600548 coding downstream 473058 4623312 ~ 4642689 (-)
trnas-uga-107 NA coding downstream 518649 4597014 ~ 4597098 (-)
trnas-uga-106 NA coding downstream 519845 4595816 ~ 4595902 (-)
zbtb46 LOC106600540 coding upstream 270634 5518339 ~ 5752210 (-)
LOC110508393 LOC106600538 coding upstream 618414 5866119 ~ 5952354 (-)
LOC110508394 samd10 coding upstream 721215 5968920 ~ 6071924 (-)
LOC110508207 LOC106600653 coding upstream 833257 6080962 ~ 6081721 (-)
LOC110508395 aar2 coding upstream 952467 6200172 ~ 6206298 (-)
G2097884 NA non-coding downstream 9910 5105609 ~ 5105837 (-)
G2097882 NA non-coding downstream 11982 5103551 ~ 5103765 (-)
G2097877 NA non-coding downstream 16761 5098768 ~ 5098986 (-)
G2097873 NA non-coding downstream 35850 5079659 ~ 5079897 (-)
G2097869 NA non-coding downstream 40635 5074833 ~ 5075112 (-)
G2098035 NA non-coding upstream 1874 5249579 ~ 5249784 (-)
G2098047 NA non-coding upstream 17369 5265074 ~ 5265428 (-)
G2098303 NA non-coding upstream 105265 5352970 ~ 5361968 (-)
G2098308 NA non-coding upstream 128158 5375863 ~ 5377732 (-)
G2098310 NA non-coding upstream 133892 5381597 ~ 5381805 (-)
G2097165 NA other downstream 790770 4324474 ~ 4324977 (-)
G2096731 NA other downstream 1164726 3949337 ~ 3951021 (-)
G2096732 NA other downstream 1168122 3947275 ~ 3947625 (-)
G2096163 NA other downstream 1806073 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 3208335 1906907 ~ 1907412 (-)
G2098765 NA other upstream 697434 5945139 ~ 5946875 (-)
G2098763 NA other upstream 699430 5947135 ~ 5949100 (-)
G2098766 NA other upstream 700033 5947738 ~ 5949613 (-)
G2098793 NA other upstream 748120 5995825 ~ 5999494 (-)

Expression


Co-expression Network