LOC110508393 (LOC106600538)


Basic Information

Item Value
gene id LOC110508393
gene name LOC106600538
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 5866119 ~ 5952354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966425.1
CATTATGACTAAATATGGAGtgaggggaggtgaggggagggacACAAGCCTTCTGGAATGTCTGATGAAGGATAAGAAGGTGCACAAGAAAAAACAGGAGAAAAATGTTTTCTCCCAGAACTTTTGGAAGGGCTACAAGAAAGAAATTGAATGTGAGGATGAAGTACCTGCGGTGAGCACCAACGAGTTCAAGCCTTGTCCTGGTGATGACCAGGATGATTCTGGTCCAGTGGGAGTGAGATTTGTGGAGAGAATGGATCCTTGTATTCTGACTGATCCATATGTGGTGTCAGGTTGGTTGGAGAAGAGGTTGGGAACTGgTACACCCTGTAGtgaaagaggggagggaaagaagaAGGTGCGTCCTGAAGAGCAGGAGCTCAGGAGTATCCCTgctaacatgatggtccagtggAAGGAGGAGTTTAAGAAGAGGTCCAGGGTAACGTGTCCTGGCTCAGGCTGCTGGTTAGAGTTCCCCAGCATCTACGGTCTCAAATACCACTACCAACGCTGCCAGGGGGTGACCCTAGCAGAGAGGTTGAGTCATGGCTGTCCGGACTGTAAGGCGGTGTTTGCCACTAAGGTCAGCCTCCAAAAGCACAAGCTGTGGAACCACCCCATCGAGACCAAGGCTGAGCCCAAACTACACAAGACCCCCGTGAAGGGGACCGCCAGGAAAAGGCCAATGGAAAACACACCACTGTCGCCTGTGTTCTTCAAAGTCAAAAAGACCCAGGAGGTGTCTAGTCCCTCCCAGAACGGGGAGTGTGCCcccaagaggggaaagaggaaaCAGCACCCACACCCCCAGCCCCCTCAGCAGCAGGCTGACACCTCCCCCAACACCTCGGGGGGCAGCGAGAGCGAAGATGAGGGGAGCAGTCTACTCCCACCATACCCCAATGAAGACCATGAGAGGACAAGGCACAGACGGAAGCAGAAAACTCCTAAGAAGTTCACTGGAGAGCAACCCTCTATCTCAGGGACGTTCGGACTGAAAGGTATGAACAAGGTAGAGGAGAAGTTGAAGGCTGGTCGTGTGAAGAGATTAGAGGGGGGTCTGTTCAGCGAGGAGCTCCAGAGGAAGCACCCTGGTCCAGCCTCCAGGAGAGACCTACCACCCCTCACCTCTGCAGAGGCACAGTGGCAGCATGCCATCTCAGAGCGGggggaggtggtgtgtcctaCCTGCTCCATTGTCACCAGAAAGACCATCTCGGGCCTCAAGAAGCACATGGAGATCTGCCGAAAGCTCCAGGATGCCCTGAAGTGCCAGCAATGCCAGAAACAGTTCAGGTCCAAGGCCGGACTCAACTACCATACAATGGCTGAGCACAGCAGCaagGCTTTGGGGAGCGAGGACCAGATGGGGGACGTgcagttggagagagaggggctgcGTAGAGTGCTCAAACAGACGGGACGAATCAAGTGTCCTAAGGAGagctgctcAGCCCATTTTTTCAGTCTGATGGGATACCAGTACCATCAGAAGCGCTGTGGCAGAGAGCTATCAGAGGAGGACAAGCCTGTGTTTCTGTGTCAGCACTGTGGGAAGACCTACCGCTCTAAGACTGGCAGAGACTACCACCTCTGCACTGAACACCCCACCACTAACAACAATACCAGCGGCAGAGGAATGAGAACAGAAGAGGGACAGCCTGCAGGAAGGAGGGAACAGAaccacatggagagagagaaggatgggagagagagggagagagagaggaaggacaacGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagagagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagacagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGCGGGTAGGGAGAAggatggtagagagagggagagagacaggaaggacaaCGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacaggaaggacaaCGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagacaggaaggacaaTGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacaggaaggacaaCGGAAAGGGTCAGGAGTTGTCTGCGGGTAGGGAGAAGGacgggagagaaatggagagagagaggaaggacaaaGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagagagggagagagaggggctgggggaggaCTTTGAGAGGACTCCTAGTGGTAGGGTGAGACGTCGGTCTGCCCAGGTAGCAGTGTTCCACCTGCAGGAGATAGCAGAGGATGAACTGGACAAGGACTGGGGCACCAAGCGAGACGACCTGGTACCGGACAGCAAGAGGTTGAACTACACTCGTCCTGGTCTTCCCATTTTCAGTCCCAAGCTGCTGGAGAGCTGGAGGAACGAGGTCAAAGAGAAGGGCTTCATCTGCTGCTCCAACGGAAGCTGTGAAGCTGTTTACTCCAGTGTGTCCGGACTCAAAGCTCATCTGGCCAACTGTAACCAGGCAGAGGGCGATGCAGGGAAGTACACCTGCTTACTATGCCAGAAGGAATTCAGCTCAGAGAGTGGTGTCAAATACCACATCAGCAAGACCCACTCTCAGaactggtTCCGAGCCTTCAGCCACATGttgcccagcagcagcagcagcatcagcagcAGGAGCAAACCGCCAGACTTCCAAGGGAAAATGGAGGTCAAGAACAGAGCCACCATGGGAAAGAAGAGAGGCCGCAAGCCCAAAGAGCGCCCCCCTGAGGCCACCCCCGTCCAAACAAACACTTTTTTCAGCACCACCCAAAACTCAGCCCCCACCCTGAACAGGGGCCAGACCCCGGTCCcgacagagacaggaaacccaGGGAGTATGACGCTAAACAGACAGCCCAACCAACCCACCACACGGAGGAGTAGGCCCAAGTGGGTGCCCCCTCCCTCCGAGTAGCTCTGCTTTCAACCCAAGAGCCAGAGAGGCTATGTCTATCTATCCACATTACGCCAGTAAGCTCAAGGATGTTTTGGATACCTCAAGGACTGGCGAACAGAGAACAAAACTAAAAACAACTGCACTCAGATCTTTGTgttttaaatatactgtatacagtttGTGTCTCCTGGTATATGTTGATATGTTTATTTAGTTTCCTCCATTCCATTTCCAAGCATCATTTCAGTTAAACTA
>XM_036966424.1
AGGTTTGTACCGGGTTTATTAGGCAGAACCCCCGAATATTACTTGCTCGATAACATTCATAATAACGCGAGAGTTTGTAAGTTGCCTGAAGGCTGTAGTTGCAACTGTCAAAGGTAGAGTGGAAACGCGCATAAACCAACACACTACTTACTATATTACTGTACCCGGCCGAGAAGATAATACCCGTATAAAAACCCAGAGGAAAGGAACTGCAGACGGCAACGAACGCGACCGAGGTCGAATCTTTTCGTTCCCTTTTTCCTCGGGTTCGTTTTCTTTTACTCGAACTAACTCTCGTGCAGCTATTGAAAATTACTGCACTAAACATATTTTTGTGCCTCCCTTTAGCTCCAGCCAGCGCAATGATTTGTTATACTCCTCCTTCGTATTAAAGTCGCCATTTTGCTTCACTGCCCAGATAAAACCTTGTATTTAAAATATAATCTTCAAGGAGCCGGAGCCGTCTCGATCTTTCCTGCCTGCTGATTTCATACGCGTTGAGGTTGAATACGTGCCTCGTGGTTGACATATTCATGCATGAGAGAGGGGGGCAAGTGAAGGCTGGAAAAAGGAGGGGGCTAAGGACCGACCGTGACGACTGGCAGTCCGCCTGCACCGACGCTCAACACGGCAGGTGTGATTGCCATGTAAGACCGGGAAAGGCGCAGCCCCACGGCCTGACCCGTACGTGGGTGACCCGGGCCACCCAGCCGCTGGTGCTGGGTAACTCCGACAATTCCAGCATGGAGATCCCCAGTATCCCACGGctggcaaagctgtcatcaaggggtCGTCCTCCAAAACAGGCCCACCCCCAGGAGACTgccaggaccacagctacagcccCTGAGAACAACAAACACAgTACACCCTGTAGtgaaagaggggagggaaagaagaAGGTGCGTCCTGAAGAGCAGGAGCTCAGGAGTATCCCTgctaacatgatggtccagtggAAGGAGGAGTTTAAGAAGAGGTCCAGGGTAACGTGTCCTGGCTCAGGCTGCTGGTTAGAGTTCCCCAGCATCTACGGTCTCAAATACCACTACCAACGCTGCCAGGGGGTGACCCTAGCAGAGAGGTTGAGTCATGGCTGTCCGGACTGTAAGGCGGTGTTTGCCACTAAGGTCAGCCTCCAAAAGCACAAGCTGTGGAACCACCCCATCGAGACCAAGGCTGAGCCCAAACTACACAAGACCCCCGTGAAGGGGACCGCCAGGAAAAGGCCAATGGAAAACACACCACTGTCGCCTGTGTTCTTCAAAGTCAAAAAGACCCAGGAGGTGTCTAGTCCCTCCCAGAACGGGGAGTGTGCCcccaagaggggaaagaggaaaCAGCACCCACACCCCCAGCCCCCTCAGCAGCAGGCTGACACCTCCCCCAACACCTCGGGGGGCAGCGAGAGCGAAGATGAGGGGAGCAGTCTACTCCCACCATACCCCAATGAAGACCATGAGAGGACAAGGCACAGACGGAAGCAGAAAACTCCTAAGAAGTTCACTGGAGAGCAACCCTCTATCTCAGGGACGTTCGGACTGAAAGGTATGAACAAGGTAGAGGAGAAGTTGAAGGCTGGTCGTGTGAAGAGATTAGAGGGGGGTCTGTTCAGCGAGGAGCTCCAGAGGAAGCACCCTGGTCCAGCCTCCAGGAGAGACCTACCACCCCTCACCTCTGCAGAGGCACAGTGGCAGCATGCCATCTCAGAGCGGggggaggtggtgtgtcctaCCTGCTCCATTGTCACCAGAAAGACCATCTCGGGCCTCAAGAAGCACATGGAGATCTGCCGAAAGCTCCAGGATGCCCTGAAGTGCCAGCAATGCCAGAAACAGTTCAGGTCCAAGGCCGGACTCAACTACCATACAATGGCTGAGCACAGCAGCaagGCTTTGGGGAGCGAGGACCAGATGGGGGACGTgcagttggagagagaggggctgcGTAGAGTGCTCAAACAGACGGGACGAATCAAGTGTCCTAAGGAGagctgctcAGCCCATTTTTTCAGTCTGATGGGATACCAGTACCATCAGAAGCGCTGTGGCAGAGAGCTATCAGAGGAGGACAAGCCTGTGTTTCTGTGTCAGCACTGTGGGAAGACCTACCGCTCTAAGACTGGCAGAGACTACCACCTCTGCACTGAACACCCCACCACTAACAACAATACCAGCGGCAGAGGAATGAGAACAGAAGAGGGACAGCCTGCAGGAAGGAGGGAACAGAaccacatggagagagagaaggatgggagagagagggagagagagaggaaggacaacGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagagagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagacagggagagagagaggaaggacaatGAAAAGGGTCAGGAGTTGTCTGCGGGTAGGGAGAAggatggtagagagagggagagagacaggaaggacaaCGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacaggaaggacaaCGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagacaggaaggacaaTGAAAAGGGTCAGGAGTTGTCTGCGGGtagggagaaggatgggagagacaggaaggacaaCGGAAAGGGTCAGGAGTTGTCTGCGGGTAGGGAGAAGGacgggagagaaatggagagagagaggaaggacaaaGAAAAGGGTCAGGAGTTGTCTGTGGGtagggagaaggatgggagagagagggagagagaggggctgggggaggaCTTTGAGAGGACTCCTAGTGGTAGGGTGAGACGTCGGTCTGCCCAGGTAGCAGTGTTCCACCTGCAGGAGATAGCAGAGGATGAACTGGACAAGGACTGGGGCACCAAGCGAGACGACCTGGTACCGGACAGCAAGAGGTTGAACTACACTCGTCCTGGTCTTCCCATTTTCAGTCCCAAGCTGCTGGAGAGCTGGAGGAACGAGGTCAAAGAGAAGGGCTTCATCTGCTGCTCCAACGGAAGCTGTGAAGCTGTTTACTCCAGTGTGTCCGGACTCAAAGCTCATCTGGCCAACTGTAACCAGGCAGAGGGCGATGCAGGGAAGTACACCTGCTTACTATGCCAGAAGGAATTCAGCTCAGAGAGTGGTGTCAAATACCACATCAGCAAGACCCACTCTCAGaactggtTCCGAGCCTTCAGCCACATGttgcccagcagcagcagcagcatcagcagcAGGAGCAAACCGCCAGACTTCCAAGGGAAAATGGAGGTCAAGAACAGAGCCACCATGGGAAAGAAGAGAGGCCGCAAGCCCAAAGAGCGCCCCCCTGAGGCCACCCCCGTCCAAACAAACACTTTTTTCAGCACCACCCAAAACTCAGCCCCCACCCTGAACAGGGGCCAGACCCCGGTCCcgacagagacaggaaacccaGGGAGTATGACGCTAAACAGACAGCCCAACCAACCCACCACACGGAGGAGTAGGCCCAAGTGGGTGCCCCCTCCCTCCGAGTAGCTCTGCTTTCAACCCAAGAGCCAGAGAGGCTATGTCTATCTATCCACATTACGCCAGTAAGCTCAAGGATGTTTTGGATACCTCAAGGACTGGCGAACAGAGAACAAAACTAAAAACAACTGCACTCAGATCTTTGTgttttaaatatactgtatacagtttGTGTCTCCTGGTATATGTTGATATGTTTATTTAGTTTCCTCCATTCCATTTCCAAGCATCATTTCAGTTAAACTA
>TU2400643
TTGAGAGGACTCCTAGTGGTAGGGTGAGACGTCGGTCTGCCCAGGTAGCAGTGTTCCACCTGCAGGAGATAGCAGAGGATGAACTGGACAAGGACTGGGGCACCAAGCGAGACGACCTGGTACCGGACAGCAAGAGGTTGAACTACACTCGTCCTGGTCTTCCCATTTTCAGTCCCAAGCTGCTGGAGAGCTGGAGGAACGAGGTCAAAGAGAAGGGCTTCATCTGCTGCTCCAACGGAAGCTGTGAAGCTGTTTACTCCAGTGTGTCCGGACTCAAAGCTCATCTGGCCAACTGTAACCAGGCAGAGGGCGATGCAGGGAAGTACACCTGCTTACTATGCCAGAAGGAATTCAGCTCAGAGAGTGGTGTCAAATACCACATCAGCAAGACCCACTCTCAGaactggtTCCGAGCCTTCAGCCACATGttgcccagcagcagcagcagcatcagcagcAGGAGCAAACCGCCAGACTTCCAAGGGAAAATGGAGGTCAAGAACAGAGCCACCATGGGAAAGAAGAGAGGCCGCAAGCCCAAAGAGCGCCCCCCTGAGGCCACCCCCGTCCAAACAAACACTTTTTTCAGCACCACCCAAAACTCAGCCCCCACCCTGAACAGGGGCCAGACCCCGGTCCcgacagagacaggaaacccaGGGAGTATGACGCTAAACAGACAGCCCAACCAACCCACCACACGGAGGAGTAGGCCCAAGTGGGTGCCCCCTCCCTCCGAGTAGCTCTGCTTTCAACCCAAGAGCCAGAGAGGCTATGTCTATCTATCCACATTACGCCAGTAAGCTCAAGGATGTTTTGGATACCTCAAGGACTGGCGAACAGAGAACAAAACTAAAAACAACTGCACTCAGATCTTTGTgttttaaatatactgtatacagtttGTGTCTCCTGGTATATGTTGATATGTTTATTTAGTTTCCTCCATTCCATTTCC
>TU2400644
TTGAGAGGACTCCTAGTGGTAGGGTGAGACGTCGGTCTGCCCAGGTAGCAGTGTTCCACCTGCAGGAGATAGCAGAGGATGAACTGGACAAGGACTGGGGCACCAAGCGAGACGACCTGGTACCGGACAGCAAGAGGGTAAGACATacacaggtacatacacacatacaaacacatttaACATGTGGTCCCTGTCTTCCTCCCCCAGTTGAACTACACTCGTCCTGGTCTTCCCATTTTCAGTCCCAAGCTGCTGGAGAGCTGGAGGAACGAGGTCAAAGAGAAGGGCTTCATCTGCTGCTCCAACGGAAGCTGTGAAGCTGTTTACTCCAGTGTGTCCGGACTCAAAGCTCATCTGGCCAACTGTAACCAGGCAGAGGGCGATGCAGGGAAGTACACCTGCTTACTATGCCAGAAGGAATTCAGCTCAGAGAGTGGTGTCAAATACCACATCAGCAAGACCCACTCTCAGaactggtTCCGAGCCTTCAGCCACATGttgcccagcagcagcagcagcatcagcagcAGGAGCAAACCGCCAGACTTCCAAGGGAAAATGGAGGTCAAGAACAGAGCCACCATGGGAAAGAAGAGAGGCCGCAAGCCCAAAGAGCGCCCCCCTGAGGCCACCCCCGTCCAAACAAACACTTTTTTCAGCACCACCCAAAACTCAGCCCCCACCCTGAACAGGGGCCAGACCCCGGTCCcgacagagacaggaaacccaGGGAGTATGACGCTAAACAGACAGCCCAACCAACCCACCACACGGAGGAGTAGGCCCAAGTGGGTGCCCCCTCCCTCCGAGTAGCTCTGCTTTCAACCCAAGAGCCAGAGAGGCTATGTCTATCTATCCACATTACGCCAGTAAGCTCAAGGATGTTTTGGATACCTCAAGGACTGGCGAACAGAGAACAAAACTAAAAACAACTGCACTCAGATCTTTGTgttttaaatatactgtatacagtttGTGTCTCCTGGTATATGTTGATATGTTTATTTAGTTTCCTCCATTCCATTTCC

Function

NR:

description
zinc finger protein 512B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966425.1 False 3337 mRNA 0.54 16 5866119 5933227
XM_036966424.1 False 3881 mRNA 0.54 18 5866119 5952354
TU2400643 False 958 TUCP 0.53 5 5866141 5868200
TU2400644 True 1028 TUCP 0.52 4 5866141 5868200
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Neighbor

gene id symbol gene type direction distance location
zbtb46 LOC106600540 coding downstream 113909 5518339 ~ 5752210 (-)
LOC110508383 LOC106566591 coding downstream 618414 5115747 ~ 5247705 (-)
LOC110508206 LOC106600546 coding downstream 773706 5080665 ~ 5092413 (-)
LOC110508381 LOC106600608 coding downstream 1027933 4836463 ~ 4838186 (-)
LOC110508376 LOC106600548 coding downstream 1223430 4623312 ~ 4642689 (-)
LOC110508394 samd10 coding upstream 16566 5968920 ~ 6071924 (-)
LOC110508207 LOC106600653 coding upstream 128608 6080962 ~ 6081721 (-)
LOC110508395 aar2 coding upstream 247818 6200172 ~ 6206298 (-)
LOC118944869 NA coding upstream 412026 6364380 ~ 6365682 (-)
LOC110508398 spata2 coding upstream 413747 6366083 ~ 6372255 (-)
G2098714 NA non-coding downstream 193 5855395 ~ 5865926 (-)
G2098717 NA non-coding downstream 8890 5850030 ~ 5857229 (-)
G2098541 NA non-coding downstream 44651 5821207 ~ 5821468 (-)
G2098539 NA non-coding downstream 46035 5819876 ~ 5820084 (-)
G2098531 NA non-coding downstream 50730 5815182 ~ 5815389 (-)
G2098774 NA non-coding upstream 14416 5966770 ~ 5967168 (-)
G2098776 NA non-coding upstream 14888 5967242 ~ 5968785 (-)
G2098794 NA non-coding upstream 44862 5997216 ~ 6003498 (-)
G2098797 NA non-coding upstream 51347 6003701 ~ 6003939 (-)
G2097165 NA other downstream 1541142 4324474 ~ 4324977 (-)
G2096731 NA other downstream 1915098 3949337 ~ 3951021 (-)
G2096732 NA other downstream 1918494 3947275 ~ 3947625 (-)
G2096163 NA other downstream 2556445 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 3958707 1906907 ~ 1907412 (-)
G2098793 NA other upstream 43471 5995825 ~ 5999494 (-)
G2098996 NA other upstream 285079 6237433 ~ 6238094 (-)
G2098997 NA other upstream 285815 6238169 ~ 6238613 (-)
G2099318 NA other upstream 473816 6426170 ~ 6439096 (-)
G2100109 NA other upstream 1251252 7203606 ~ 7206488 (-)
G2098764 NA non-coding upstream 75443 5943643 ~ 5944956 (-)
G2098765 NA other upstream 76939 5945139 ~ 5946875 (-)
G2098763 NA other upstream 78935 5947135 ~ 5949100 (-)
G2098766 NA other upstream 79538 5947738 ~ 5949613 (-)

Expression

LOC110508393(LOC106600538) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110508393(LOC106600538) Expression in each Bioproject

Bar chart with 20 bars.
LOC110508393(LOC106600538) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network