LOC110508394 (samd10)


Basic Information

Item Value
gene id LOC110508394
gene name samd10
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 5968920 ~ 6071924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588899.2
GTGCTCTGTCTATCAGTATACACCGTGCCTCATAAGCACCCAGTAGGCGAGTGACAAACCGTGCGCTCACACTTTGCCACCCAGCCAGATACAGAGAAGCAATGGGAGACGATAACTGAGGCAACCACAAAGAGATATACACTGAGACCGACTATGGCTGTGGACGctgCGTCCAGCTTCAGCTTCTGCCGTGCATCCCTGGAGCAAACCGTTTCTGCAGAGGAGCTAAGCTACCAACTGCCTCGCCGGCCAGGGTCTAGTCTCACCTGGCACGATGGGAGGGGACAGATGAACACGTATACACGCGCCGTCAAACTACTGCAGCAACCTGGCTCAAAGGGCATACAGCTGCATCCAGGAGAAGCTTTCACTGTGTACCACACCAGCCCTACGCTGTCCAGTCTGTCCAAACCAGTGGTGCTGTGGACCCAACAGGACGTCTGCAAGTGGCTAAAGAAACACTGTCCTCACAACTACCTAACCTATGTAGAAGCCTTCTCCCACCACGCTATCACAGGTCGCGCATTGCTGAGGTTGAACGGGGAGAAGTTGGAGAGGATGGGCATCGTCCAGGAGACACTGAGACAGGAGGTTCTACAGCAGGTCCTTCAGCTACAAGTCAGAGAAGAGGTCCGCAACCTGCAGCTGCTCAgcagagcctCCTTCGGAAACCTTTCTTAGCTCGATCCCTTTCTCGATCCCTTTCTCCTCCGCTGAAACAATACGTCACCAGTAGCTATGGTAGGACCTGCTCACTCCAGATATGTGACAGCAGAACTGGGCTGTAAAAGGAGAGAACGGAAGAGGGGAGAGAACGGAAGAGGGGAGAGAACGGAAGAGGGGAGAGAACGGAAGAGGGGAGAGAacggaagagggggagagaagagtctATTTTCTACATGACAAACAGACTGAAGGAGGATTCCCATTCAACAAGGCCAAACTGGTTTAAACGAGGAGCGacggagtgggagagaaagagacagtgaactGCTGAATAAAAGAGCACAGACTGTGACATAGAGAAAAGATGTATGAACTGACGTTGACATTGTAGACAAATCAATTTGTCAAATCAAAGTTATATTATTATAACTACATGAGGTTCTTAGCTTCTTCTTTCATTGTGGGATGAGAACTATTACTGATCAATCAATGTGGTACATTACAGTGGGTGGCTTATTCCAAGATGGGTGGAAAGGAAATGGGAAACCGGATGTCAATGTCTCTGTATGATACATTGTGAACAGGGTTGTGAGTATCTTTTCCTCTCGGGATTTTCATTTTGGAATATGTATATCGTTTTGATAGATCTAATTCATACAGTATAACGTACATCATTGCCTACGTGAGCACCCTCTCCCCAAAGCATATTCTCTTCCTTTCTTCTATAAAGCTGTGCCATGACGATGTACAGAATGTCACCTCCCA
>TU2400710
agaagagtctATTTTCTACATGACAAACAGACTGAAGGAGGATTCCCATTCAACAAGGCCAAACTGGTTTAAACGAGGAGCGacggagtgggagagaaagagacagtgaactGCTGAATAAAAGAGCACAGACTGTGACTGTAGACAAATCAATTTGTCAAATCAAAGTTATATTATTATAACTACATGAGGTTCTTAGCTTCTTCTTTCATTGTGGGATGAGAACTATTACTGATCAATCAATGTGGTACATTACAGTGGGTGGCTTATTCCAAGATGGGTGGAAAGGAAATGGGAAACCGGATGTCAATGTCTCTGTATGATACATTGTGAACAGGGTTGTGAGTATCTTTTCCTCTCGGGATTTTCATTTTGGAATATGTATATCGTTTTGATAGATCTAATTCATACAGTATAACGTACATCATTGCCTACGTGAGCACCCTCTCCCCAAAGCATATTCTCTTCCTTTCTTCTATAAAGCTGTGCC

Function

symbol description
samd10 Predicted to be involved in transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be active in cytoplasmic side of plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588899.2 False 1431 mRNA 0.49 5 5968920 6071924
TU2400710 True 490 lncRNA 0.39 2 5968948 5969470

Neighbor

gene id symbol gene type direction distance location
LOC110508393 LOC106600538 coding downstream 16566 5866119 ~ 5952354 (-)
zbtb46 LOC106600540 coding downstream 216710 5518339 ~ 5752210 (-)
LOC110508383 LOC106566591 coding downstream 721215 5115747 ~ 5247705 (-)
LOC110508206 LOC106600546 coding downstream 876507 5080665 ~ 5092413 (-)
LOC110508381 LOC106600608 coding downstream 1130734 4836463 ~ 4838186 (-)
LOC110508207 LOC106600653 coding upstream 9038 6080962 ~ 6081721 (-)
LOC110508395 aar2 coding upstream 128248 6200172 ~ 6206298 (-)
LOC118944869 NA coding upstream 292456 6364380 ~ 6365682 (-)
LOC110508398 spata2 coding upstream 294177 6366083 ~ 6372255 (-)
LOC110508399 LOC106600629 coding upstream 344772 6416696 ~ 6456082 (-)
G2098776 NA non-coding downstream 135 5967242 ~ 5968785 (-)
G2098774 NA non-coding downstream 1752 5966770 ~ 5967168 (-)
G2098764 NA non-coding downstream 23964 5943643 ~ 5944956 (-)
G2098714 NA non-coding downstream 102994 5855395 ~ 5865926 (-)
G2098717 NA non-coding downstream 111691 5850030 ~ 5857229 (-)
G2098938 NA non-coding upstream 19416 6091340 ~ 6091575 (-)
G2098939 NA non-coding upstream 19772 6091696 ~ 6092018 (-)
G2098949 NA non-coding upstream 30854 6102778 ~ 6103018 (-)
G2098951 NA non-coding upstream 35908 6107832 ~ 6108065 (-)
G2098994 NA non-coding upstream 158412 6230336 ~ 6232447 (-)
G2098766 NA other downstream 19307 5947738 ~ 5949613 (-)
G2098763 NA other downstream 19820 5947135 ~ 5949100 (-)
G2098765 NA other downstream 22045 5945139 ~ 5946875 (-)
G2097165 NA other downstream 1643943 4324474 ~ 4324977 (-)
G2098996 NA other upstream 165509 6237433 ~ 6238094 (-)
G2098997 NA other upstream 166245 6238169 ~ 6238613 (-)
G2099318 NA other upstream 354246 6426170 ~ 6439096 (-)
G2100109 NA other upstream 1131682 7203606 ~ 7206488 (-)
G2100707 NA other upstream 1521370 7593294 ~ 7593815 (-)
G2098794 NA non-coding upstream 27746 5997216 ~ 6003498 (-)
G2098797 NA non-coding upstream 34231 6003701 ~ 6003939 (-)
G2098798 NA non-coding upstream 40436 6009906 ~ 6010143 (-)
G2098804 NA non-coding upstream 47219 6016689 ~ 6016995 (-)
G2098793 NA other upstream 26355 5995825 ~ 5999494 (-)

Expression


Co-expression Network