LOC110508402 (LOC106600630)


Basic Information

Item Value
gene id LOC110508402
gene name LOC106600630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 6603175 ~ 6639138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966719.1
AGATATTTTAACCACAAATCTCAATGTCCTTATCCGAGACCGAATCAGTCAGCCAAGTCTCTTTGAAAACCAGAATATCAGGGATTGTGTCCTGTACCCAGATATGAGGAAGGTCCAACTGAGATACCAACAAAGACACAGCCAGGAGTACACTCAGACTAGCTTGGAACATAGAGTAGCTTTTTGTACCTCTTATCAGGGTGATTGACAGTTTGTTGATAATTGTGAGAGGTTTTTGTGAGAGGTATTTCCTCCGCACACTGTTTCAGACTAGaaggacagacaaagagacatagacagaaagaaaagagagagacacacaaagcaataaacacacagacattcaGTGTTGGAAGACAGCCATGGGAGTTGAGGAGCAGAGGGCTGGGGAGTTTTACGTGGAGAGGGATGTTATGAACGAGCTTTGCTTGGACAAGTTGGCCAGAAGACGGACTCACTCCACCAGACCTCTCCTGAAGGAGCGGGTGAAAGATTCCCTCAGGTGTTCAGTGCCCAAGCTGAAGCGTTCTGTGCTGAGCTTTATACCTATCCTGTCATGGCTGCCTCGTTACTCAGTGAGACAAGACGCACTGGGAGACCTCATATCTGGCATAAGCATTGGCATCATGCACCTGCCTATGGGTTTGGCCTATGCTCTGCTGGCCTCTGTGCCCCCAGTGTTTGGCCTCTACACTTCCTTCTACCCTGTACTCATGTACTGCATCTTTGGCACCTCCAGACACATCTCCGTAGgcGCATTTGCTGTGACCAGCATCATGATAGGCACCACGACAGAGAGGCTGGCCCCAAACAGTAACTTCATGATTCTAAATGGAACCAATGGGACTGAAGTTATAGATGTAGTAGCCCGTGATGTCGCCAGAGTACAGATAGCAGCCAGCACCACCTTACTGAGTGGGATCTTTCTGTTTCTGCTGGGCATGATTCGGTTTGGTTTTGCGGTGACGTTCCTGTCGGATCCCATGGTACGTGCTTACATGACAGGAGCAGGTATACATGTGGTACTTTCCCAACTCCCAAGCCTCTTTGGGATCCGCGTTGGACGCTTCTCCGGACCGCTGTCTCAGGTCTATctcCTAATAGATATCTGTAGACATCTGCCAGAGACTAACATTGCGGCCGTGGTGGTAACTCTTGTGGCCTTGGCGGTCCTCATAGCGGTCAAAGAACTCAACATTTACTATGAGAAGAAAATGCCTGTGCCCGTTCCAATAGAACTCATAACGATCGTAGTAGCAACACTTATCTCTTACTACTGCAAACTGCACAGCCTATACAAAGTGGCCGTCATCGGACAGATCCCCAAAGGACTAAAGGCTCCCAGGTCACCTGACGTTAGTATGTGGGGTTCGGTAGTTGGTGATGCATTCGTAGTAGGCATAGTGGGATATGCCCTTAACATCTCCTTGGGAAAAATCTTTGGCCAAAAACACGGCTACAATGTGGACAGCAACCAGGAGATGGTAGCTATTGGTCTCTGTAACATAGTGGGAGGATTCTTTCAATGCCACGCTATTGCTGCTTCTCCGTCACGTACCCTCCTCCAGGATAGCACTGGGGGCAAGACACAGGTTGTGGGGCTGATTTCTTCAGTACTTGTGCTGATCTTCATTCTGCAACTGGGGTCACTATTTGAGGAGCTACCCAAGGCTGTCCTGGCCTGTATAGTGCTTGTGAACCTGAAAGGCCTTTTTATGCAGTTTAAAGACATTCCTGCACTCTGGAAGAGCAATAAGGTCGACCTGCTGGTGTGGTTGGTAACGCTGGTGTGTACTATCTTACTGAACCTGGACATCGGCCTAGGTGCATCCATCGGCTTCTCTATGCTCACTGTCATCTTCAAAACACAACTGCCGAGGTACTCTATCCTGGGGCATGTTCCTGGGACTGAGCTCTACCTGGATACAGACACATATGAGGAGGCTAAAGAGATACCAGGTATCACCATCTTCCGTTCCTCCACCACAATGTACTATACCAACGCTCAGCTCTACCTGGACGCACTGCAGGAGAAGAGTGGAATTGACATTGGAATGCTGCTGATGAAAAAGAAGAAAAGAGACACTGAAGAAAAGAGAAAAGAcgagaaagaaaaaaacaaagcCAAAAAAGAGGCAAAAAAGAATGGTGTGAATGGACGCCTACCCAACAATACAGTCCATCCAGATGAcaagagggatgaggagaaaggTTCCCCAGACCTGAAATTGAACCAGACAGCCATTGCCCTAGTTGACCGACCCATCAACGGACAGGTGAACTGGGGTTTTGAGCAGCAAGGTAACGGGTTCGACCAGGACTCTAAAACTGATATTCATGGCGATGATCACATAACACAGATGTCCAGTACcggaagagaaggggagatggggaggagctCCGTCAacgacacacacaccatcatcctGGACCTATCCACAGCCAACTTTGCTGACACGGCCACTGTGAAGACGCTGAAaaatATATTCCTAAACTACAGAAAGATTGACATTGACATTTATTTAACTGGATGCCAAGTCTGTGTGGTGGAGCAGTTATCGAGTGCAGGCTTCTTCTCTGAGTCCATCCCTAAAAGCTGTCTGTTCGCTACGATCCACGACGCGGTGCTACACTGCCTCCGACTGCATGGGGCCTCAGACGTACCCATCATCTACGAGTATGCTCTGGACTTGACCTGCACTACCAACATGTAACCAACAGGGGTCACTTTGTTCCTCTTCCACTCCACCTTCCTCCTTCCATAACTTCACCTTCATCTGCCTGGCTTCCCATTGGTTCCCCtcacctcttccctctctgtgAAAGAGAATGCACcaccgtgtgtgcgtgtgttttgcCGATTGGACCAAGGCAGTTCCCCCTTCATGTTATGTTATATAACTGAACACAAAATACCTCCCCGAAATACAACTATAAAACTCCCCAAAATATTTGTCAGCCACCTAAGATGTGTCGTCTAGTCAGCAGTTCCCTTCACCTCCCTATTTAATCCATTCCTACTGGGGCCAGTGTGTCCCAGACAGTAGTATGTCCTGTACCTCAGGGGCCTTCTCCCATATATAAATACACATtcttatatatatacatacacacacataaatatacatacagtatactgtatatatatatatacacacag

Function

NR:

description
solute carrier family 26 member 6-like

GO: NA

KEGG:

id description
K17471 SULTR3; sulfate transporter 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966719.1 True 3160 mRNA 0.48 19 6603175 6639138

Neighbor

gene id symbol gene type direction distance location
LOC118944893 NA coding downstream 29647 6573338 ~ 6573528 (-)
LOC118944894 NA coding downstream 30123 6572936 ~ 6573052 (-)
LOC110508399 LOC106600629 coding downstream 147093 6416696 ~ 6456082 (-)
LOC110508398 spata2 coding downstream 230920 6366083 ~ 6372255 (-)
LOC118944869 NA coding downstream 237493 6364380 ~ 6365682 (-)
LOC118944895 NA coding upstream 41368 6680506 ~ 6680622 (-)
LOC118944892 NA coding upstream 65723 6704861 ~ 6704979 (-)
LOC110508403 LOC106599971 coding upstream 113670 6752808 ~ 6799814 (-)
LOC110508405 LOC106599977 coding upstream 178096 6817234 ~ 6826618 (-)
LOC110508409 LOC106599985 coding upstream 346602 6985437 ~ 7016472 (-)
G2099375 NA non-coding downstream 356 6602019 ~ 6602819 (-)
G2099384 NA non-coding downstream 40908 6559904 ~ 6562267 (-)
G2099377 NA non-coding downstream 53608 6548898 ~ 6549567 (-)
G2099239 NA non-coding downstream 212501 6389544 ~ 6390674 (-)
G2099428 NA non-coding upstream 6859 6645997 ~ 6646308 (-)
G2099433 LOC101078606 non-coding upstream 9436 6648574 ~ 6648800 (-)
G2099835 NA non-coding upstream 48725 6687863 ~ 6688080 (-)
G2099839 NA non-coding upstream 51480 6690618 ~ 6690829 (-)
G2099840 NA non-coding upstream 53017 6692155 ~ 6692411 (-)
G2099318 NA other downstream 164079 6426170 ~ 6439096 (-)
G2098997 NA other downstream 364562 6238169 ~ 6238613 (-)
G2098996 NA other downstream 365081 6237433 ~ 6238094 (-)
G2098793 NA other downstream 603681 5995825 ~ 5999494 (-)
G2098766 NA other downstream 653562 5947738 ~ 5949613 (-)
G2100109 NA other upstream 564468 7203606 ~ 7206488 (-)
G2100707 NA other upstream 954156 7593294 ~ 7593815 (-)
LOC110508434 LOC106600027 other upstream 1129278 7767544 ~ 7837267 (-)
LOC110508443 LOC106600051 other upstream 1354273 7993411 ~ 8044009 (-)
G2101243 NA other upstream 1519081 8158219 ~ 8158518 (-)

Expression


Co-expression Network