Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508414 |
| gene name | LOC106599996 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 7327605 ~ 7369379 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription factor E2-alpha-like isoform X3 |
| id | description |
|---|---|
| K15603 | TCF4_12; transcription factor 4/12 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021588930.2 | False | 7224 | mRNA | 0.45 | 21 | 7327605 | 7369379 |
| XM_036966948.1 | False | 7221 | mRNA | 0.45 | 21 | 7327605 | 7369379 |
| XM_036966949.1 | False | 7170 | mRNA | 0.45 | 20 | 7327605 | 7369379 |
| XM_036966951.1 | False | 2534 | mRNA | 0.56 | 20 | 7327606 | 7363499 |
| XM_036966950.1 | False | 7159 | mRNA | 0.45 | 20 | 7327607 | 7369379 |
| XM_021588931.2 | True | 7212 | mRNA | 0.45 | 21 | 7327608 | 7369379 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508416 | LOC106600441 | coding | upstream | 5410 | 7303866 ~ 7322195 (+) |
| LOC110508413 | LOC106599990 | coding | upstream | 127161 | 7140153 ~ 7200444 (+) |
| LOC110508411 | LOC106599988 | coding | upstream | 288560 | 7030044 ~ 7039045 (+) |
| LOC110508408 | LOC106569542 | coding | upstream | 365589 | 6948428 ~ 6962016 (+) |
| LOC110508407 | LOC106599981 | coding | upstream | 436280 | 6834257 ~ 6891325 (+) |
| LOC110508419 | NA | coding | downstream | 13511 | 7382890 ~ 7385612 (+) |
| LOC110508420 | mbd3 | coding | downstream | 17433 | 7386812 ~ 7392377 (+) |
| LOC110508421 | LOC106600003 | coding | downstream | 27864 | 7397243 ~ 7406462 (+) |
| LOC110508424 | LOC106600007 | coding | downstream | 162799 | 7532178 ~ 7536942 (+) |
| LOC110508426 | LOC106600016 | coding | downstream | 213347 | 7582726 ~ 7597400 (+) |
| G2099806 | NA | non-coding | upstream | 83416 | 7243986 ~ 7244189 (+) |
| G2099793 | NA | non-coding | upstream | 104308 | 7222795 ~ 7223297 (+) |
| G2099791 | NA | non-coding | upstream | 106465 | 7220850 ~ 7221140 (+) |
| G2099790 | NA | non-coding | upstream | 106859 | 7220423 ~ 7220746 (+) |
| G2099758 | NA | non-coding | upstream | 108345 | 7215030 ~ 7219260 (+) |
| G2100249 | NA | non-coding | downstream | 4775 | 7374154 ~ 7374417 (+) |
| G2100253 | NA | non-coding | downstream | 11475 | 7380854 ~ 7381280 (+) |
| G2100214 | NA | non-coding | downstream | 23957 | 7393336 ~ 7393851 (+) |
| LOC110508401 | LOC106600630 | other | upstream | 699574 | 6523039 ~ 6628031 (+) |
| G2099116 | LOC106600629 | other | upstream | 898668 | 6427205 ~ 6428937 (+) |
| zfp313 | zfp313 | other | upstream | 938170 | 6381000 ~ 6389696 (+) |
| LOC110508396 | LOC106600623 | other | upstream | 986646 | 6285145 ~ 6341018 (+) |
| G2100344 | LOC107579696 | other | downstream | 58192 | 7427571 ~ 7428415 (+) |
| G2100382 | LOC106600009 | other | downstream | 169810 | 7539189 ~ 7564546 (+) |
| G2101665 | NA | other | downstream | 1258593 | 8627972 ~ 8632449 (+) |
| G2102205 | NA | other | downstream | 1821582 | 9190961 ~ 9246215 (+) |
| G2102343 | NA | other | downstream | 2127182 | 9496561 ~ 9501330 (+) |
