LOC110508432 (LOC106600026)


Basic Information

Item Value
gene id LOC110508432
gene name LOC106600026
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7688645 ~ 7705872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588949.2
ATGAGAGTCCAGTCCACGCGTCGAAAAGTAGGTTAGCAGGGTAGACAGAGTGAAAGGCAGTCCGAACGAAAAAGGGGAGGTAGAGTATTTGGGACTTTGCTTGCAAGCTAAACCACCGTGGGAGCATTTTGTAAAAAGTTACCGAAATAGTGCATCGAGACAAACAGGACACAATTCAACTTGAACAGTCGATTTGCTTTGTATTTGATTCACCATTGCAATACTTTGTCGAACGATAAGGAAGCACTCGCGGATTTTTGCcttgtttaatatatatatatatatatatatatatatatatatatatatatatatatatatatataatctagtTCGTCAGGCTAAATACGTTGTATTTTACGTGCCAGCAAATGCTTGTCTTTCAACAGTTGGacatatatttttattctgtTACACACCACATGAAGTCCAATTCATTGATCCAGAAACGATCATATTCAACATGAGAGcTCAAATAGAAGTAATACCCTGCAAGATCTGTGGGGACAAGTCCTCAGGAATCCACTATGGAGTTATTACCTGTGAAGGCTGCAAGGGGTTCTTCCGCCGCAGCCAGCAGAACAATGCCATGTACTCGTGTTCCCGCCAGAGGAACTGTCTTATTGACCGAACCAGCCGCAACCGCTGCCAACACTGCAGACTGCAGAAGTGTCTGGTGTTAGGCATGAGCCGGGACGCGGTGAAGTTTGGCCGTATGTCTAAGAAGCAGCGCGACAGCCTGTACGCTGAGGTCCAGAAGCACCAGAAGAACCAGGAGtgtctgaaccagggtctgtcacTGTCCAGGGAAGACGTTGCTGGGGGAGAAAGCAAGGGGGACAGGCACGGGGAGCTCAGTCGCTCCTACAGCAGCGGGGGCTCCAGCTCCACCCTGAGTGACCTGGATGACATCGCAGCGCTCCCCAAACTGTTTGACCTCCCCTTGACCCCACAGGAGGCCCACGAGTACTGCAGCCTGGAGCTGCAAGAAGACCACGGCGGAAGCACTGGGAACACCTCCAAttcttcatcaccatcatcatcctcgCCCATTTCGTCCAATCAGAATTCTCCCCAGCAAAATCTACTGGATGTCACTGACGCCAATGGGATCAAACACGAGTACCAGATGTTGTCGCACACACACGTGctcctggcacacacacacgccacactgCTAGAGACACTGCCTGATGACTGCACTCTTATGGATATAGAGCGTATCACCCAGAGTGTGGTCAAGTCCCACTTGGAGACGAGTCAGTACAGCTCTGACGAACTGAAGAGGCTGACATACAATCGGATGCAGTACTCACCTGAGGAGACTCGCAACTTCCAGTGCGAGTCTGCAGAGTCTGTGTGGCAGCAATGTGCCCACCACATCACCAATTCCATCCAGTACGTGGTGGAGTTTGCCAAACGCATTACAGGCTTCATGGACCTGTGTCAGAATGACCAGATCATTCTGCTCAAAGCAGGCTGTCTGGAGGTGCTGTTGATTAGGATGTGCAGGGCATTTAACGCCACCACCAACACCATATTCTTTAATGGCAAATTTGCCTCTGCTCAGCTCTTCAAAGCCCTCGGTTGCGATGACCTGGTCAGTGCCGTGTTTGACCTGGCAAAAGGGCTCTCCCGCCTGCAGCTGACCGATGAGGAGATGGCTCTGTTCAGTGCCGCTTGCTTGCTGTCCCCAGACCGACCATGGTTAGCCGACAGCCAGAAGGTCCAGAAGCTACAGGCGAAGGTCTACCTGGCTCTGCAACACAGTCTGCACATGAGCGGGGCTGCCGACGAGAAGCTAGACCAGATGGTATCCAAGCTGCCGATAATGAAGTCCATCTGTAATCTCCACATCGACAAGCTGGAGTTCTTTCGTCTGGTCCACCCCGAGACTGCATACAGCTTCCCACCACTCTACCGGGAAGTGTTCGGGAGTGAGATTTCTCTCCCCGACTCTACAAACAACTcctagagagaaagatggagtgaATGTGTTAGAGAGAAATAAGTATGGAGGTAGGGAAGTGAAAGGAGAGAATGAATAAGTGAGGGATATAAATAGTGACCTCAGAAATAACCAGCTGTTAACGAGACAATCCAGGACTTAAAATACTCAGTCTCCCAGCATCCTGTTGTGTTAGTCCACCACTATCCCAGCAGGTCATACATCTTACACTACAGACTTCACCTTCATGGTCCTTTTGTACCGTAGCACTTTGGACAAACTAATGGGCGATATGCATATTCTACAGTATGCACATAGATCATTTAGCATTAGAACATATTTTTTTCAATGCTCCCCAACCCTGTCATGAATGTACCTCACTGACAAGCACCAATGCACCAGCTAGAGCCCCACACCAAATGTAAATACTAACACCCTGCTTCAGTTCGACTGTTCAATTTAGAATCGTTGTAATTCTTTGGTTCTACTCAACATACCCAGGGTTCATTCATTTGTAGTCCCACAGACAGTTCTTGGCGgtaccatatacagttgaagtcggaagtttatatactcttaggttggagtcattaaaactcatttttcaaccactccacaaaatacttgaaaacaaactatagttttggcaagtcggttaggacatcta

Function

NR:

description
PREDICTED: nuclear receptor ROR-beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588949.2 True 2615 mRNA 0.48 9 7688645 7705872

Neighbor

gene id symbol gene type direction distance location
LOC110508430 LOC106600020 coding downstream 6417 7655045 ~ 7682228 (-)
stap2a LOC106600019 coding downstream 33890 7650296 ~ 7654755 (-)
ub2r1 ub2r1 coding downstream 58905 7627912 ~ 7629740 (-)
sirt6 sirt6 coding downstream 69078 7609234 ~ 7619567 (-)
LOC110508425 LOC106600009 coding downstream 123964 7539189 ~ 7564681 (-)
LOC110508434 LOC106600027 coding upstream 61672 7767544 ~ 7837267 (-)
LOC110508436 LOC106600442 coding upstream 156450 7862322 ~ 7878366 (-)
LOC110508438 LOC106600038 coding upstream 178020 7883892 ~ 7980218 (-)
LOC110508437 LOC106600038 coding upstream 200529 7906401 ~ 7909755 (-)
LOC110508442 LOC106600049 coding upstream 282764 7988636 ~ 7992523 (-)
G2100679 NA non-coding downstream 130778 7557602 ~ 7557867 (-)
G2100663 NA non-coding downstream 151718 7535321 ~ 7536927 (-)
G2100649 NA non-coding downstream 170731 7517699 ~ 7517914 (-)
G2100643 NA non-coding downstream 174974 7513366 ~ 7513671 (-)
G2100820 NA non-coding upstream 123438 7829310 ~ 7829521 (-)
G2100821 NA non-coding upstream 123772 7829644 ~ 7829867 (-)
G2100822 NA non-coding upstream 124409 7830281 ~ 7830565 (-)
G2100832 NA non-coding upstream 132264 7838136 ~ 7838393 (-)
G2100844 LOC106569516 non-coding upstream 147672 7853544 ~ 7856941 (-)
G2100707 NA other downstream 94830 7593294 ~ 7593815 (-)
G2100109 NA other downstream 482157 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1249549 6426170 ~ 6439096 (-)
G2098997 NA other downstream 1450032 6238169 ~ 6238613 (-)
G2098996 NA other downstream 1450551 6237433 ~ 6238094 (-)
LOC110508443 LOC106600051 other upstream 287539 7993411 ~ 8044009 (-)
G2101243 NA other upstream 452347 8158219 ~ 8158518 (-)
G2101464 NA other upstream 532272 8238144 ~ 8239853 (-)
LOC118936616 LOC106600091 other upstream 775860 8480324 ~ 8522153 (-)

Expression


Co-expression Network