LOC110508437 (LOC106600038)


Basic Information

Item Value
gene id LOC110508437
gene name LOC106600038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7906401 ~ 7909755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588957.2
tctagtttgagaaacagactcacaagtcctcaactggcagcttcattaaatagtaccctcaaaacaccagtctcaacgtcaacagtgaagaggagactcggGGATTCTGGCCTTCAAGTCACTTTTACTTTATATTTTTTACTTATGTGTTTTTTTCTACCTAACACTTGTTTTTCTTAGAACtttttaaagcattgttggttaagggcttttaagtaagcatttcactctaaggttgtattcggcgcatgtgacaaatacaattggatttgtgTGTGTTCCTCAGTCCCGGGTGCGGCCCCTCGGCAGGTGGAGGTCCAGCCCTTCAACTCCACGGCCCTCAGGGTCACCTGGCGATCTGTGTTGGCAAGGCAACGCCAAGGCCAGATCCGTGGTTACCAGGTGCACTATGCTCACGTGGAGAGCGGCTCATCACGCACCCTTCCCCGGATCAAAGACCTGCTATTGGACGACAGCCAGTTTGTGGAGGATGACTTTACTGAATACGAGATGATTGTGGGGGGTCTTAAGCCAGAGACCTCTTACTCTGTGTCTGTGGCTGCTTACACCACTAAAGGGGACGGAACACACAGTAAAGCCAGGGTGGTGCAGACACTGGGGATTGTGCCTGGTGCCCCCTCCCTGTCAGTGCGTCCGGGATCTGAGTCCTCCGTGGTGGTGAGATGGGGGCCCCCTTCAAGGGGGTCAGACTCAGGTTCAGGTGCCAAAGGGTCTGAAATTCAGATCCAGGGTTACCGGCTACAGTTTGGGCTGAAGAATGCCACTCCGGACACTATAGTGGAGTTTTCGTCCAGGGAGCGAATGTACACGCTCACAGACGTAATTCCAGGTTTGACCTATGTCGTTACTCTTTCTGCCAAAAGCCGGTCGGGGTATGGAGATGAGTCGTGGGAGGAACTCGAGATGCCCGAGTACCCACCCAGGGGGTACCCCCAAATCTTGGAATCCATTAATGCCACCTGCTGTTCACTCCAGTTCTCCTGGCTACCCCCTGTGCCAAGCGAGCGAAACGGCGTGATCACTGAATACACAGTAGCTTACCGGGAAGAGGGGGGTCTTGACCCTATGGGCATTGACCCTCTCGGTCCTCCTCGCCAGATCACGCTCCCAGCCAGTGAGTCCAGCTACACCATCCTGGGCCTGAATCACAGCACTGGGTACGAGGTGCAGATGTGTGCTCACACCAGCGTAGGTCCCGGCCCCTTCAGTCCCCCGCTGCTGTATCGCACAATGACTTTCGAGACAGGTAGGGCTGGCCTGGGGCCTGTGCACAGGGCTCAGGAGAAACCCCCTTATTCACTCTAAGCACTGGTCTAGAGTCATAGTTGTCTGCCTTAATCTGAACCTTGAATATCATAGTCCAAAATGCAAAGCTGACTCTGGGCCAGTTCTAAGGAGTGACTTTCATCCACAGAGTGGTTGAAAACTACAAAGTCCACTGGAAAATCCCAGTCTCCTCCAACCACCCacacccaccacctcctccctcacCTACCCCTCACCTCCAAGGAAAATGGACTGAATGCCACAGGAATGAATGTATGGAGAACACTCTCACACACCCACAGGTAAAAGTCAGCAGAAAAGCCGGGTTGGTTGTGAACTGTGAGGTAAGTGTTGAGTCTTGGCTCATTGGCTGAACGAGGCTTTAGTTTAGACACATGGTTGGTATCTAAAGGTAAGCTTTTACATCAGTCAATCCCTCACCTCCTTTTGGATTGACTGAACCTATTCCAACCTTTGTTGACATGTCGTTGGTGTGTTTTTTAACCCTAACACTCCCAGCAGGCACTAaaccactaaacacacacattctTCAGTTCTGTTTCTCACCCTCCACTCCTCATTCTGATCAATCAATCCacctcttcacctcctcctcctccaaacctTCATCTATCGTTCCCACTAACTTGAATTCAGATCAGTCTAAAGACATGCTTCTACCCCGTcactcacacagacacccacTCACAGGTCTACAGGGTGGAAACGGAGGAGTGGAGAGGTTGATTGGCACAGGGCAGTCTAGATTGACCCTGCCTTGACTGTGTCTATATGTATCTTACAGGAGAATGATGTACGTCTAACCTCCCCTCATTCCCTTCACAGCGACCCCATAACCCTTTGAGAATATAGTTATTTCGAAGTTACAtattctgtgtgttctgttccgGGAAATCTACCAGAGCGAGTTAGGCTAGAATGAGATAAAGTAGGATTAGGCAGATGATGTCATAGTAAAGAGGAAGTACAGTGCACACAGGAGCCAACGGTTCTTATCTCTTCTATTCTTCAATTCTATTCACTCTTAGTTGGTACCCAGTGCCCATATACATACTTCCTAAAGAATGTTGAGATGTATGACATCACTGTCGTGTCCTTCTTCATCTTATTTTAGGAATTGGGATCCTTTGTTATAGAACCTACTAGAATGGGTTGGTAGCCTCTCCACAAAGGGTTGTGGACCGTTGAGACATGTGAATAGGGCGGACTACACCTCAACTGATCATTTGTCTGTTCTCCATCTTCC

Function

NR:

description
receptor-type tyrosine-protein phosphatase S-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588957.2 True 2554 mRNA 0.49 4 7906401 7909755

Neighbor

gene id symbol gene type direction distance location
LOC110508436 LOC106600442 coding downstream 28035 7862322 ~ 7878366 (-)
LOC110508434 LOC106600027 coding downstream 69134 7767544 ~ 7837267 (-)
LOC110508432 LOC106600026 coding downstream 200529 7688645 ~ 7705872 (-)
LOC110508430 LOC106600020 coding downstream 224173 7655045 ~ 7682228 (-)
stap2a LOC106600019 coding downstream 251646 7650296 ~ 7654755 (-)
LOC110508442 LOC106600049 coding upstream 78881 7988636 ~ 7992523 (-)
LOC110508443 LOC106600051 coding upstream 86638 7993411 ~ 8044009 (-)
LOC110508444 LOC106600443 coding upstream 152285 8062040 ~ 8066701 (-)
LOC110508446 LOC106600062 coding upstream 351401 8261156 ~ 8304991 (-)
LOC110509207 LOC106600069 coding upstream 416140 8324762 ~ 8335344 (-)
G2100851 NA non-coding downstream 48939 7857231 ~ 7857462 (-)
G2100844 LOC106569516 non-coding downstream 49460 7853544 ~ 7856941 (-)
G2100832 NA non-coding downstream 68008 7838136 ~ 7838393 (-)
G2100822 NA non-coding downstream 75836 7830281 ~ 7830565 (-)
G2100821 NA non-coding downstream 76534 7829644 ~ 7829867 (-)
G2100940 NA non-coding upstream 15058 7924813 ~ 7935962 (-)
G2101052 NA non-coding upstream 99313 8009068 ~ 8028624 (-)
G2101155 NA non-coding upstream 146684 8056439 ~ 8056817 (-)
G2101164 NA non-coding upstream 158782 8068537 ~ 8068752 (-)
G2101173 NA non-coding upstream 168768 8078523 ~ 8078732 (-)
G2100707 NA other downstream 312586 7593294 ~ 7593815 (-)
G2100109 NA other downstream 699913 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1467305 6426170 ~ 6439096 (-)
G2098997 NA other downstream 1667788 6238169 ~ 6238613 (-)
G2101243 NA other upstream 248464 8158219 ~ 8158518 (-)
G2101464 NA other upstream 328389 8238144 ~ 8239853 (-)
LOC118936616 LOC106600091 other upstream 571977 8480324 ~ 8522153 (-)
LOC110508274 LOC106600446 other upstream 1067097 8976699 ~ 8978156 (-)

Expression


Co-expression Network